Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00477 ATGAGTATTGTAAACGTTAGTTTTCAAGTTGAAGATCGCTCTGGTAGAATCACGAGAGCACGGGCAAAAGAATTAAGCGAATCAGGAGACGTTCCATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCATATTGTACGAGCTAACTCAAAAAGAGTGGCATCTGATGATATTAACATTTGTTCAATTTCTTCCAGTGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGGTTCTGATAAGAATTGCAGAAATGCTTCTAATATTCAGGGAGACAAACCAACTAGAAGAATTTCTGCTAAAGCTAAGGCAAATGCGCCTTTAAATGCTCCTGTAGAAATTCTAGGAGCAGAAGAAGATGAAAACACAAGACTAGCTGAGGACTTATCTAAAATAAGGGTGGTAGAATCGCGAGAGGTATCTTTAAGAGAAACTCTTTGTCACACCAGCGGAGAATGTGGAGTTTTAGATATGGTTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCGAATGAAAAATATATGGCATCTGAACAATCGGCAGCATCAAGTGATACAGGTGTTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGAATACGTGTGACGGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCGAGATATCACTGCAGACATGCGAGGAATACTGGTTGATTGGCTTATAGAGGTTTCTGACGAATACAAGTTGGTTCCAGATACACTCTACCTCACTGTGAATGTTATTGATCGGTTTCTCTCTCGAAATTGTATTGAAAGAAAGCGTCTCCAGCTTCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATATGAGGAGATCTGTGCGCCAGGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAAGAGAGGTGGTAGAAATGGAGAGTAAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTCATACAATCGGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCACTGATCGCCGCATCCGCCGTTTTTCTTGCAAGATGGACACTCGACCAATCGGATCATCCCTGGAATCCAACTCTGGAGCACTATACATGTTACAACGCTTCTGAGCTGAAAACTGTTGTGCTTGCCCTCCAAGACTTGCAACATAACGCCAGTGCTTCCTCCTTAAATGCCATACGTCAGAAGTATAGACAACCAAAGTTCAAATGCGTAGCGACATTAGCGTCGTCTCGATCGGTTCTATCGCTATTTGAAGAACAAGATTGA 1437 41.2 MSIVNVSFQVEDRSGRITRARAKELSESGDVPCSSKSSGVQKHIVRANSKRVASDDINICSISSSGLPNKRRAVLKDVTNISTKGSDKNCRNASNIQGDKPTRRISAKAKANAPLNAPVEILGAEEDENTRLAEDLSKIRVVESREVSLRETLCHTSGECGVLDMVLSVSSEESIPQPNEKYMASEQSAASSDTGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQRDITADMRGILVDWLIEVSDEYKLVPDTLYLTVNVIDRFLSRNCIERKRLQLLGVASMLIASKYEEICAPGVEDFCFITDNTYTKREVVEMESKVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTCYNASELKTVVLALQDLQHNASASSLNAIRQKYRQPKFKCVATLASSRSVLSLFEEQD 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2120521 2125588 + CmaCh09G004770.1 Cma09g00477 300482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00477 478 Gene3D - 229 342 - -
Cma09g00477 478 SUPERFAMILY Cyclin-like 207 341 IPR036915 -
Cma09g00477 478 SMART cyclin_7 251 335 IPR013763 -
Cma09g00477 478 SMART cyclin_7 348 436 IPR013763 -
Cma09g00477 478 PIRSF Cyclin_A_B_D_E 16 477 IPR039361 -
Cma09g00477 478 SMART Cyclin_C_2 344 467 IPR004367 -
Cma09g00477 478 PANTHER CYCLINS 50 474 IPR039361 -
Cma09g00477 478 SUPERFAMILY Cyclin-like 343 465 IPR036915 -
Cma09g00477 478 Gene3D - 215 463 - -
Cma09g00477 478 Pfam Cyclin, C-terminal domain 344 466 IPR004367 -
Cma09g00477 478 ProSitePatterns Cyclins signature. 246 277 IPR006671 -
Cma09g00477 478 PANTHER CYCLIN-A2-4 50 474 - -
Cma09g00477 478 CDD CYCLIN 245 334 IPR013763 -
Cma09g00477 478 Pfam Cyclin, N-terminal domain 215 342 IPR006671 -
Cma09g00477 478 CDD CYCLIN 342 434 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00477 Cma-Chr9:2120521 Cma17g00828 Cma-Chr17:6501508 3.50E-143 dispersed
Cma01g01526 Cma-Chr1:10671557 Cma09g00477 Cma-Chr9:2120521 0 wgd
Cma12g00306 Cma-Chr12:1560091 Cma09g00477 Cma-Chr9:2120521 3.31E-138 wgd
Cma08g00631 Cma-Chr8:3549982 Cma09g00477 Cma-Chr9:2120521 8.23E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00477 K06627 - csv:101204275 786.178