Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00486 ATGGCAAGTCGTGTCAAGGAAGAAGAGAAAATTGAAAGAACCATACGCAATCTTTTGAAACTTCCGAAGAACCGAAGATGTATTAACTGCAATAGTCTGGGACCGCAATACGTCTGTACAACATTCTTGACATTCGTCTGTACAAATTGTAGTGGAGTACATCGTGAGTTCACTCACCGAGTAAAGTCAGTGTCAGTGGCAAAATTCACGGCAGAAGAGGTGACTGCTCTTCAGGCAGCGGGAAATGAGAAAGCACAGCAGATATATTTAAAAACGTGGGATCCCCTGCGACATTCTTATCCAGAAAACAGCAATCTCCATCAACTACGGGACTTCATCAAGCATGTCTATGTTGATAGGAAATATGCGGGTGAGAAAAGTGCTGATGAGCTCCCGAGGTTGAGGCTTACTGACAAGGACTCATCCCAAGAAAGGAGAAGGGTTACTCCATATTATGGTGGATTTCAGAACCTGCAAGTTGAGATGTCAAGATCTAGTTCAAAGAGGGAACACAGGAGTCCAATTTATTACTCTGATGAGAGAAGCAGTCCTTCGTATTTAAAAGAAAACTCCAGATATGGAGGCTATAGGAGAAGCTTCACACGCATTGAGGTTGTAGATGACAGAACCAAAGATGATGGACTTCGAATTCGCAAGCTCTCAAATGGATATTCCAGGCCAGTTATCCTGTTTAGTCGTAGTCAAGGAAATTTAGAGAAGTCTTCTCTTGCAGTTGCATTTCATAATAAAGTTACGTCGGGCAAAAATGAACCTGCCCGTAGACTTGAGGATGATGTAAGAAAAGGGATGGACGCTGGTAGCTCTGATCAGATTGGTGTTCATGTTAATCCCGTGGAAGCTAAAAGAGACAACGTAGAGAGCCTAATTGATCTTGGCATCAGTTCTGATGAGCCTGATGGTGCTGCCGCATCACAGACCCAACATATGCCTTCAACTAACAATGACAACTGGAACGCCTTTGAGTCATCTTCAACAAAGAACACATCACCAGCCCCCAGTGCAAATACTCTGGAAGCTTTGCTTTTTGAATTATCAGTACCATCAACTGGAGCTGATAATAAACCGACTGATGGACCTGGAAATGGCCATGTGCCAGCAACTGTTTCTGGAAGTACTCTTACACCATATTTCGCTGTGGAGCAGACAGCACTACCAATCAACGTTCAAGCTTCTGTAGCTGGGAGCCCTCCCCAACTCACATCCAATAAGGGTGGTGATATTGCACTAAAAGTCATTAATGGACAACTGATGACTTCAGCTGCCGTGCCAAATTTAGAATGGACTTCATTGGAATCCAATGCACAAGGATTTTCAAGTGTTCCAGCTGCAAAGATAGTTGCTGATTCAAAACCAGCTCAGGGTACCACCAATGAAGTTGGATCCCAACCTCCATCTCCGGAAAAGAGTTCTTGCGGAAGAAAGGAACTTCCTCTGGACCTTTTTGCCGTTGACTACCCTCAAGTTCCCACCTCACAACCGGGTTGGCAGACTGAAGCTCAACGTGTCATGGGCCAAAGCTTGCAGTATTATCCTACCCCACTGGCTGCAAGACCAACGAACCCATTTGATCTTGATGATGAAAACAGTAGATTTTACCCACAGAGTGCTCCTAGTACCATGCCCGCTCTTGCTAGCTTAACACGGAGTTATAGCGACCAACTGGAAACCCAATATTCAGGTACATACGCGGGGCAACAGGTCTATGGGAGTATTCCATCTTTGAGACCACCGGGAGGAGTAGATAAGTATGGAGGATCCTCCTTCGCAAGTCCTTCTGGCTCCATCAATGCGACACTCCAGCAGCCGAGTAGAACATATTCAGCACCCAACGCAAATCCAAATGCTGCTGCTGCTTCATTTCGCAATAATAATCCCTTTGGATAA 1905 45.04 MASRVKEEEKIERTIRNLLKLPKNRRCINCNSLGPQYVCTTFLTFVCTNCSGVHREFTHRVKSVSVAKFTAEEVTALQAAGNEKAQQIYLKTWDPLRHSYPENSNLHQLRDFIKHVYVDRKYAGEKSADELPRLRLTDKDSSQERRRVTPYYGGFQNLQVEMSRSSSKREHRSPIYYSDERSSPSYLKENSRYGGYRRSFTRIEVVDDRTKDDGLRIRKLSNGYSRPVILFSRSQGNLEKSSLAVAFHNKVTSGKNEPARRLEDDVRKGMDAGSSDQIGVHVNPVEAKRDNVESLIDLGISSDEPDGAAASQTQHMPSTNNDNWNAFESSSTKNTSPAPSANTLEALLFELSVPSTGADNKPTDGPGNGHVPATVSGSTLTPYFAVEQTALPINVQASVAGSPPQLTSNKGGDIALKVINGQLMTSAAVPNLEWTSLESNAQGFSSVPAAKIVADSKPAQGTTNEVGSQPPSPEKSSCGRKELPLDLFAVDYPQVPTSQPGWQTEAQRVMGQSLQYYPTPLAARPTNPFDLDDENSRFYPQSAPSTMPALASLTRSYSDQLETQYSGTYAGQQVYGSIPSLRPPGGVDKYGGSSFASPSGSINATLQQPSRTYSAPNANPNAAAASFRNNNPFG 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2176848 2183194 + CmaCh09G004860.1 Cma09g00486 300491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00486 634 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Cma09g00486 634 MobiDBLite consensus disorder prediction 594 634 - -
Cma09g00486 634 CDD ArfGap_AGFG 12 122 - -
Cma09g00486 634 MobiDBLite consensus disorder prediction 457 475 - -
Cma09g00486 634 MobiDBLite consensus disorder prediction 160 191 - -
Cma09g00486 634 MobiDBLite consensus disorder prediction 306 339 - -
Cma09g00486 634 MobiDBLite consensus disorder prediction 456 479 - -
Cma09g00486 634 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Cma09g00486 634 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Cma09g00486 634 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 634 - -
Cma09g00486 634 PANTHER ARFGAP/RECO-RELATED 1 634 IPR044820 GO:0005096
Cma09g00486 634 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Cma09g00486 634 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Cma09g00486 634 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Cma09g00486 634 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Cma09g00486 634 SUPERFAMILY ArfGap/RecO-like zinc finger 12 123 IPR037278 -
Cma09g00486 634 MobiDBLite consensus disorder prediction 583 634 - -
Cma09g00486 634 MobiDBLite consensus disorder prediction 299 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00486 - - - cmo:103503792 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01330 Cma-Chr5:10064209 Cma09g00486 Cma-Chr9:2176848 8.35E-99 dispersed
Cma09g00486 Cma-Chr9:2176848 Cma14g00472 Cma-Chr14:2301949 1.71E-55 dispersed
Cma01g01535 Cma-Chr1:10733963 Cma09g00486 Cma-Chr9:2176848 0 wgd
Cma12g01237 Cma-Chr12:9689736 Cma09g00486 Cma-Chr9:2176848 9.26E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00335 . . . . . . Bpe04g00038 . . . . . Cma09g00486 . . . . . . . . . . . . . . . . . . . . . . Cme04g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011757 1 2 0 1 1 0 2 1 0 1 1 1 2 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00486 Cma_Chr09 FPKM 0.188521 0.0 0.0 0.0 0.520799 0.448929 0.608327 1.101238 0.609856 0.71487