Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00494 ATGACGACACCAATGTCCGAAACAAGGTCGCCGTTACCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTTTTGCCGGCGTTTGGAACTGTTGTGACCGATGGATACTCAAACCTGAACAAGTTCATTATAGTTCCGTATGATAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAGCTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGATATTGTCTTGACCTTCTTCGTGGCTTATCTGGATAAATCCACTTATCTCCTCGTTGATGATCATAAGAAGATTGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTAATATACAGAATTTTCACTGGAAAGATGAACCGCAATGAGGTCTTCGGTTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGTGTTAGTGAACTTTTCTCAAGGCTCGAGAAAGACATACGCTTCAGTTACTTTTTAACAAGACTCGTCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGCTGGCAATTCATCATAAAGATGCAGAAAATACATGGATTGGAATTGAAGTAGAAGATTTTAAAAGCAGAAGTATCTGGCTTGGCTACACCTATTCAATATATTGGTCAATTGTCACACTTGCTACCGTTGGTTATGGGGACTTGCATGCAGTTAATCTAGGGGAGAAGATTTTTAGCATCTGCTACATGTTATTCAACATCGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACATTTATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAAGCTTGAAAGATCAAATGTTGGCGCACATGCAGCTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGAACCAGTATTGCCCAGCACCTTTTCCGTCATACAGTTGAGAATGCATACTTATTCAAGGATCTATCTTACGACTTAATCGCCCAATTGGTGTCTGAGATGAAAGCCGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGATCGTGTACAAGACTGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCACAGATGGCAGGGGAAATTGCTGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAAATGTTACAACCAAACAACGAAGATGGAAAAACCCTTTTCATCAACTTCACTGAGCACTTGAAGGGGATGAAAAAGGAGGAGCAAAACGAAATACCCTACTTTTCAGAGTTGCTGGAAGACCTAAATTCAGAGTTCACAGAACCGAATGAGACACAAAATCAGAGACTACCAGATTATTATGGAGATCAAAAAATGGAAGGATTGCCAGAAGCATCTACACCACATACAGATCGCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGACAATGGTATGGGAAAACTGGTATTTTTGCCCAAGTCGATCGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTATCATGGCTGATGGCTCTAAAGTAGAAGACTTGAATGTTTTAAGAGAGGGTGATCATTTATTTTTTGTCTGA 1893 41.79 MTTPMSETRSPLPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVTDGYSNLNKFIIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFVAYLDKSTYLLVDDHKKIAVRYLTSLWFPMDVASTLPFQVIYRIFTGKMNRNEVFGFLNLLRFWRLRRVSELFSRLEKDIRFSYFLTRLVKLICVTLLAVHSAGCFYYWLAIHHKDAENTWIGIEVEDFKSRSIWLGYTYSIYWSIVTLATVGYGDLHAVNLGEKIFSICYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPESLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRTSIAQHLFRHTVENAYLFKDLSYDLIAQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVIVYKTGTEQILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQMLQPNNEDGKTLFINFTEHLKGMKKEEQNEIPYFSELLEDLNSEFTEPNETQNQRLPDYYGDQKMEGLPEASTPHTDRIRVIIHEHHPDESTKDDNGMGKLVFLPKSIEELFGLAEKRFGKRGSSIIMADGSKVEDLNVLREGDHLFFV 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2207121 2214703 - CmaCh09G004940.1 Cma09g00494 300499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00494 630 Pfam KHA, dimerisation domain of potassium ion channel 561 629 IPR021789 -
Cma09g00494 630 ProSiteProfiles KHA domain profile. 561 630 IPR021789 -
Cma09g00494 630 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Cma09g00494 630 Pfam Ion transport protein 61 304 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma09g00494 630 CDD CAP_ED 381 493 IPR000595 -
Cma09g00494 630 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 1 62 - -
Cma09g00494 630 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 62 629 - -
Cma09g00494 630 SMART cnmp_10 381 498 IPR000595 -
Cma09g00494 630 SUPERFAMILY cAMP-binding domain-like 310 500 IPR018490 -
Cma09g00494 630 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Cma09g00494 630 Gene3D Jelly Rolls 345 511 IPR014710 -
Cma09g00494 630 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00494 630 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00494 630 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00494 630 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00494 630 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00494 630 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma09g00494 630 PANTHER POTASSIUM CHANNEL AKT1 62 629 IPR045319 GO:0005249|GO:0006813
Cma09g00494 630 PANTHER POTASSIUM CHANNEL AKT1 1 62 IPR045319 GO:0005249|GO:0006813
Cma09g00494 630 Gene3D - 63 305 - -
Cma09g00494 630 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00494 Cma-Chr9:2207121 Cma13g00555 Cma-Chr13:5665470 2.28E-180 dispersed
Cma01g01541 Cma-Chr1:10763372 Cma09g00494 Cma-Chr9:2207121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00494 K21867 - csv:101215177 1129.01