Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00501 ATGGCGGTGTCTGTTAAAATAATGTCTCTTACTGTCGCAACTCTAGGTGTGATATCCTTTATATTTGGAGTCGTAGCTGAGAACAAGAAGCCTGCATCCGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTAAATATCCAGCGGACCCAACTGTGGCCCTGGGATATCTTTCAGTTGCGTTTCTTCTTGCTTCTTCAATTGCAGGATACTTCTCTTTGTTCTATCCTTACCAAGGAAAATCCGCTCCTCGAGGTGCCATGTTTAAGAGCAGCAGTTTCTCTATTTTCTTCAACATTGCCTTGTTCACAACTGGATTGGCTATAACTTTGCTCGTATGGCCTACAGTCACCGAGCAAATTCACTTGACTCGTAACGTTCATCAGAATCTCGAGACAGCGTGCCCAACCGCTAAGACGGGTCTTCTGGGTGGTGGTGCATTTCTATCACTTGATTCATCCCTCTTCTGGTTGGTTGCCCTGATGTTGGCTGAAAATGCTCGAGAGGATTACTTTGATGAAATAGAGGAAAAAGGAGCCAGTGTCTTCGCCGAAATCCGGAGTGGGAGTGGGAGCGGGAACGAAAGCGATTTTCCTGTTCTCTTGCACATTTTTCTTCGTCGTTCAATTCTGTGTCTGGTAAAATTTATCTTGGGATCAATGGCCGTGTCTGTCAAGATAATGTCTCTTACTGTCACAACTCTAGGTGTGATATCCTTTATATTTGGAGTCGTAGCTGAGAACAAGAAGCCTGCATCCGGAACTCCCATCCCAGGCAAAGGCATTGTTATCTGTCAATATCCAGCGGACCCAACTGTGGCCCTGGGATATCTTTCCGTTGCGTTTCTTCTTGCTTCTTCAATTGCAGGATACTTCTCTTTGTTCTATCCTTACCAAGGAAAATCCGTTCCTCGAGGTGCGATGTTTAAGAGCAGCACTTTCTCCATTTTCTTCAACATTGCCCTGTTCACAACTGGATTGGCTATAACTTTGCTTCTATGGCCTACAGTCATCGAGCAAATTCACTTGACTCGCAACGTTCATCACAATCTCGAGGCAGCATGCCCGACCGCTAAGACTGGTCTTCTGGGTGGTGGTGCCTTTCTATCCCTTGATTCATCCCTCTTCTGGTTGGTTACCCTGATGTTGGCTGGAAATGCTCGAGAGGACTACTTTGATGAAATTGAGGAAAACGGAGACAGTGCTGAGGCTCTTAAGAACAACGCATGA 1230 45.93 MAVSVKIMSLTVATLGVISFIFGVVAENKKPASGTPIPGKGIVICKYPADPTVALGYLSVAFLLASSIAGYFSLFYPYQGKSAPRGAMFKSSSFSIFFNIALFTTGLAITLLVWPTVTEQIHLTRNVHQNLETACPTAKTGLLGGGAFLSLDSSLFWLVALMLAENAREDYFDEIEEKGASVFAEIRSGSGSGNESDFPVLLHIFLRRSILCLVKFILGSMAVSVKIMSLTVTTLGVISFIFGVVAENKKPASGTPIPGKGIVICQYPADPTVALGYLSVAFLLASSIAGYFSLFYPYQGKSVPRGAMFKSSTFSIFFNIALFTTGLAITLLLWPTVIEQIHLTRNVHHNLEAACPTAKTGLLGGGAFLSLDSSLFWLVTLMLAGNAREDYFDEIEENGDSAEALKNNA 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2264374 2269817 + CmaCh09G005010.1 Cma09g00501 300506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00501 409 PANTHER OS05G0465400 PROTEIN 1 180 - -
Cma09g00501 409 PANTHER OS05G0465400 PROTEIN 221 402 - -
Cma09g00501 409 Coils Coil 392 409 - -
Cma09g00501 409 PANTHER OS07G0462200 PROTEIN-RELATED 1 180 - -
Cma09g00501 409 PANTHER OS07G0462200 PROTEIN-RELATED 221 402 - -
Cma09g00501 409 Pfam Protein of unknown function (DUF1218) 279 374 IPR009606 -
Cma09g00501 409 Pfam Protein of unknown function (DUF1218) 59 154 IPR009606 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00501 - - - csv:101222863 332.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01560 Cma09g00501 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01560 Cma-Chr1:10834528 Cma09g00501 Cma-Chr9:2264374 2.45E-103 dispersed
Cma01g01559 Cma-Chr1:10831275 Cma09g00501 Cma-Chr9:2264374 2.48E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g261 . . . . . . . . . . Cma01g01560 . . . . . . . . . . . . . Cla05g01780 Cam05g1899 Cec05g1910 Cco05g1973 Clacu05g1892 Cmu05g1773 Cre05g1901 . . . . . . . . . . . Bda13g01287 . . . . . Cmo01g01607 . Cma09g00501 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001692 4 3 4 4 4 2 0 2 1 2 2 2 3 2 2 6 2 3 0 2 2 1 2 2 2 2 3 3 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00501 Cma_Chr09 FPKM 17.251431 19.6628 21.934893 22.52025 33.152504 30.272831 34.820187 9.940975 11.203273 13.051968
Cma09g00501 Cma_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cma09g00501 Cma_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cma09g00501 Cma_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0