Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00509 ATGAACACTCTCCGGATCTCATTCTCGTCGTTTCCACTGTTGAAGACACTCCCCAATTCTTCCTCGTTGAAACCGGCCCAAATCGCCGCAAATTCTGCTCACCGTCGAATCTTTGTCATGAATTCTAGCTCGAAGCTTGATTCTAGGTCGTCTTCGTCGTCGATATGTCAAGTTCCGGGGCTAGAATCGGAGGAGATGGACAGGATTGCGGAACAAATGTTCCGGCGGTATGCGTCTCCTTCTTCTTCGAGTGTTAAGAGAGGAAAAGGAGTGGCCATTGTATGGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCCCTGTATAAGGCCTGGATTTCGTCAGAGGCTGTGTTGCCGGTGTATTGCGTTGATCCGAGACTTTTTGGTTCTACCTGCTACTTTGGATTTCCTAAAACTGGAGCATTGAGAGCTCAATTTATTGTTGAATGCTTGGCTGATTTGAAAAGGAATTTAATAAACCGAGGTCTTAACTTGCTTATTCAACATGGGAAGCCTGAAGAAATTCTCCCTTCTCTTGCTAAAGCTCTTGGTGCCCACACAGTCTATGCTCAAATGGAAACTTGTAGTGAGGAACTATACGTTGAAAGAATGGTAAGCAAAGGACTCAAAACAGTGGTGCTATCACCAACCTCAGAGAAGTCTGCCAAGCCAAGCTCTGCTAAAAGCCTTACTTTGCAACTTGTTTGGGGCACCACGATGTACCACATAGATGACCTTCCATTTGATACCAACAGTTTGCCTGATGTCTACACTCAATTTCGTAAATCTGTTGAAGCTAAATGTGCTATCCGAGATTGCATTAGACTTCCAGCTCTTCTTGGACCTCCAGCAAGCATCGATAATTGGGGATGTGTTCCCTCGCTTGATAAGCTTGAGCTTCAACCGCCAAGTGTTGTTAAGGGCATGAGGTTTATTGGGGGTGAGACCGCTGCTCTCTCTAGAATCTATGAGTACTTCTGGAAGAAGGATTTACTACGGATCTACAAGGAAACAAGGAATGGGATGTTAGGACCTGACTACTCTACAAAATTCTCTCCATGGCTAGCTTCAGGAAGCATTTCACCACGTCTCATTCACGAAGAGGTAAAGAGATATGAGAAGGAAAGGGAAGCAAATCAATCTACTTATTGGGTGTTGTTCGAATTGATATGGAGGGATTACTTTAGGTTTCTTTCAGTCAAATATGGCAATTCTCTTTTTCATATAGGTGGCCCAAGAAAAGTGGATTCCAAATGGAGTCGAGACAAAAATTTGTTTGAATCATGGAGAGATGGCCGTACAGGGTATCCTCTAATAGATGCAAATATGAAGGAATTGTCAACAACTGGGTTCATGTCGAATCGAGGACGGCAGATAGTATGTTCCTTCCTTGTTCGAGATATGGGTATTGATTGGCGTATGGGAGCTGAATGGTTTGAGACATGCCTTCTGGATTATGACCCTTGCTCCAATTATGGAAATTGGACATATGGAGCTGGTGTTGGGAATGACCCTAGAGAAGATCGTTACTTCAGTATCCCCAAGCAAGCACAGACATACGATCCCGAGGGCGAATATGTAGCGTATTGGTTGCCGCAGCTACGAATGTTACCCAAAGATAAGAGGCATTTCCCAGGAAAAATGCTGTACATGGAACAAGTAGTAGCTCTGAAGTTTGGGAATGCTGGAAGGCCCCAAAGCCAAGACTATGCAAGAAGAAAAAACTTTGGGGGGAGACAAGCAAAGGACTTCAGAAGATAA 1764 44.39 MNTLRISFSSFPLLKTLPNSSSLKPAQIAANSAHRRIFVMNSSSKLDSRSSSSSICQVPGLESEEMDRIAEQMFRRYASPSSSSVKRGKGVAIVWFRNDLRVLDNEALYKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVECLADLKRNLINRGLNLLIQHGKPEEILPSLAKALGAHTVYAQMETCSEELYVERMVSKGLKTVVLSPTSEKSAKPSSAKSLTLQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAKCAIRDCIRLPALLGPPASIDNWGCVPSLDKLELQPPSVVKGMRFIGGETAALSRIYEYFWKKDLLRIYKETRNGMLGPDYSTKFSPWLASGSISPRLIHEEVKRYEKEREANQSTYWVLFELIWRDYFRFLSVKYGNSLFHIGGPRKVDSKWSRDKNLFESWRDGRTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRMLPKDKRHFPGKMLYMEQVVALKFGNAGRPQSQDYARRKNFGGRQAKDFRR 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2285232 2289593 - CmaCh09G005090.1 Cma09g00509 300514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00509 587 Pfam FAD binding domain of DNA photolyase 388 555 IPR005101 -
Cma09g00509 587 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 409 564 - -
Cma09g00509 587 Gene3D HUPs 52 238 IPR014729 -
Cma09g00509 587 Pfam DNA photolyase 92 273 IPR006050 -
Cma09g00509 587 PANTHER CRYPTOCHROME DASH 74 563 - -
Cma09g00509 587 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 90 218 IPR006050 -
Cma09g00509 587 PANTHER CRYPTOCHROME 74 563 IPR002081 -
Cma09g00509 587 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 88 287 IPR036155 -
Cma09g00509 587 Gene3D - 239 408 - -
Cma09g00509 587 PRINTS DNA photolyase signature 435 451 IPR002081 -
Cma09g00509 587 PRINTS DNA photolyase signature 455 473 IPR002081 -
Cma09g00509 587 PRINTS DNA photolyase signature 494 508 IPR002081 -
Cma09g00509 587 MobiDBLite consensus disorder prediction 566 587 - -
Cma09g00509 587 TIGRFAM crypto_DASH: cryptochrome, DASH family 91 534 IPR014133 GO:0003913|GO:0006281
Cma09g00509 587 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 309 567 IPR036134 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00509 K25656 cry, CRYD; cryptochrome - csv:101221042 1061.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01604 Cma09g00509 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00426 Cma-Chr8:2413630 Cma09g00509 Cma-Chr9:2285232 3.71E-64 dispersed
Cma09g00509 Cma-Chr9:2285232 Cma17g01084 Cma-Chr17:7677955 1.02E-55 dispersed
Cma09g00509 Cma-Chr9:2285232 Cma09g00512 Cma-Chr9:2291467 0 proximal
Cma01g01552 Cma-Chr1:10809413 Cma09g00509 Cma-Chr9:2285232 1.44E-08 transposed
Cma08g00639 Cma-Chr8:3621685 Cma09g00509 Cma-Chr9:2285232 3.42E-41 transposed
Cma01g01551 Cma-Chr1:10808284 Cma09g00509 Cma-Chr9:2285232 3.27E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g409 . Blo12g00706 . . Bpe02g00107 Bpe04g00446 . . . . Cma01g01604 Cma09g00509 Car01g01224 . . Cpe06g00379 . . . . . . . . . . . . . . . Cone4ag1336 Cone7ag1593 . . Lsi04g02232 Csa03g04443 Chy04g00257 . . . Bda11g00766 . . . . . . Cmo01g01651 Cmo09g00506 . . . Car09g00443 . Cpe02g00374 Bhi09g02431 . . . . . . Cla11g01379 Cam11g1436 Cec11g1464 Cco11g1460 Clacu11g1595 Cmu11g1414 Cre11g1834 . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00509 Cma_Chr09 FPKM 1.335254 1.132161 1.835648 1.527079 6.412673 6.29035 6.03335 0.0 0.0 0.079858