Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00521 ATGCCTCGTAAGGTGAGCTACGGGTTGGATTTCGATGAAGATTACGACGAGTACGACGATTATGATTATTACGACAATGACTTCGACGTAGAAGAAAAAGAGAAGACACCTGAGGCTAAGGAAGGAACAAAGGGGCACAAGCTTTGGCGATGCACGATCTGCACTTACGACAATGAAGACAGTTTTACTGCTTGTGATATATGTGGAGTTCTGCGCATCCCTTTGGTCAACGACAGAAATAATCACGATGATGGAACAGTTGAGAACATTTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTCACCAAATCAGATACCCAAAAGGGAAGTAAAATTTCAAGAGCAGAACGATAAATTTTTGGAGGAAAGAGAAGATAACATCCTCAAGATTGGGAATATCCGGGGCCATTTGCATGAAGTCCATAATGCTTCTAGTACCTATAGTCATGTCCGTACTAATATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAAGGGATTGCGTTCCTCCAAAGTTGATTTAAAAGTCAGCCACAACGACTTCAACTCTTCAATATTATCTTCAGACGTCACTAAGAAGTGTGCAAATAATGAAGTATTGGCTTCAAAAGGTGCACATAGATCGTCTGCTGTATTGCCGACGGGCAAATTAGGCAGTGTAGGAAATACACAGCTGAGTACCAAAAGTTCAGACAACTGGAGCACAACAATTGGAAAAAGTACAGTGGTCACTGAAGAGCATAATACGTCAATTAGTATAACGAAAAATTCACGATCACGTGATAACAGGTCATCAAGCACTTCCACATCAAAATCAGCAGGCAAATTTGAAAGCATGGATGAGAGCAGTAACCGTTCTGTGGAGCAGGAAAAGCCCCAAAGTCTTGCCGGTAGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGTGCCTTACAAGGTTGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACTTATTGGGACGTGTATCCCAGAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGGTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTCGCTTATTTTGATTCTAAAAGATATCATGTAGTTGTACTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCCGGTATGGACAGCTCGAAGGGGCAAACAAGAGAACATGTGCAGTTAATCAGGAGCTTTGGCGTAGATCAGATAATTGTTGCCGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTACAACTTCATTAAACTGCAACTTGGAACCTTTTTTCGTTCTTGTGGTTTTAAAGATTCATCGTTGACTTGGATTCCGTTGAGTGCCATGGCAAATCAGAATCTGGTGAATGCCCCTTCTGATGCTCAATTGTTGTCCTGGTATCGTGGACCTAATCTATTGGAGGCAATCGATTCCCTTCAACCACCCGCTAGAGATTTCTCTAAGCCGCTGCTTATGCCGATATGTGATGTAGTTAGATCGCTTTCACTAGGACAAGTGTCTGCCATTGGCAAGCTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGGCACTGTGCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATTGCAAGAGCGGGGGACAATGTGACTGTTAGTCTACAAGGAGTTGATGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGTCATCCTGATTTTCCTGTTGCTATTGCAAAACATTTGGAATTGAAGATTCTAACCTTGGAACTTGCAACTCCAATATTAATAGGATCTCAGTTGGAAGTTCATATACAACATGTAAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCGTTGCTTGATTCGAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTGTTCTAAGTGCTAAACAGAGTGCAGTGATTGAGGTTATTTTACAAAGCCCAGTTTGTGTTGAAACATTCTCAACTAGTCGAGCTCTCGGGCGAGTATTTCTGAGAGCAATGGGCAGAACCATAGCTGTCGGCATTGTAACCCAACTAATTGGAGACCCTGAATGA 2349 42.61 MPRKVSYGLDFDEDYDEYDDYDYYDNDFDVEEKEKTPEAKEGTKGHKLWRCTICTYDNEDSFTACDICGVLRIPLVNDRNNHDDGTVENICKDSGVSKMAKSLFASSPNQIPKREVKFQEQNDKFLEEREDNILKIGNIRGHLHEVHNASSTYSHVRTNIVPFKFDIPSPDDVVSKGLRSSKVDLKVSHNDFNSSILSSDVTKKCANNEVLASKGAHRSSAVLPTGKLGSVGNTQLSTKSSDNWSTTIGKSTVVTEEHNTSISITKNSRSRDNRSSSTSTSKSAGKFESMDESSNRSVEQEKPQSLAGSLNNMVLNVKSAYANYISGLGKTSNVPYKVDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYNFIKLQLGTFFRSCGFKDSSLTWIPLSAMANQNLVNAPSDAQLLSWYRGPNLLEAIDSLQPPARDFSKPLLMPICDVVRSLSLGQVSAIGKLEAGALQSGSKVLIMPSGDKGTVRTLERNSQACKIARAGDNVTVSLQGVDASSVMAGGVLCHPDFPVAIAKHLELKILTLELATPILIGSQLEVHIQHVKEAARVARIVSLLDSKTGKVTKKAPRVLSAKQSAVIEVILQSPVCVETFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2314019 2320662 + CmaCh09G005210.1 Cma09g00521 300526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00521 782 Pfam Elongation factor Tu GTP binding domain 354 571 IPR000795 GO:0003924|GO:0005525
Cma09g00521 782 ProSiteProfiles Zinc finger RanBP2 type profile. 40 74 IPR001876 -
Cma09g00521 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 585 IPR027417 -
Cma09g00521 782 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 351 576 IPR000795 GO:0003924|GO:0005525
Cma09g00521 782 Gene3D Translation factors 672 779 - -
Cma09g00521 782 SUPERFAMILY Translation proteins 573 668 IPR009000 -
Cma09g00521 782 MobiDBLite consensus disorder prediction 226 291 - -
Cma09g00521 782 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 674 778 IPR009001 -
Cma09g00521 782 PRINTS GTP-binding elongation factor signature 355 368 IPR000795 GO:0003924|GO:0005525
Cma09g00521 782 PRINTS GTP-binding elongation factor signature 414 422 IPR000795 GO:0003924|GO:0005525
Cma09g00521 782 PRINTS GTP-binding elongation factor signature 434 444 IPR000795 GO:0003924|GO:0005525
Cma09g00521 782 PRINTS GTP-binding elongation factor signature 450 461 IPR000795 GO:0003924|GO:0005525
Cma09g00521 782 PRINTS GTP-binding elongation factor signature 495 504 IPR000795 GO:0003924|GO:0005525
Cma09g00521 782 PANTHER OS04G0595300 PROTEIN 51 780 - -
Cma09g00521 782 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Cma09g00521 782 PANTHER TRANSLATION FACTOR 51 780 - -
Cma09g00521 782 CDD EF1_alpha 355 574 - -
Cma09g00521 782 Gene3D Translation factors 579 668 - -
Cma09g00521 782 Gene3D - 344 575 IPR027417 -
Cma09g00521 782 CDD HBS1_C_III 669 777 - -
Cma09g00521 782 Pfam Elongation factor Tu domain 2 600 664 IPR004161 GO:0005525
Cma09g00521 782 SUPERFAMILY Ran binding protein zinc finger-like 45 72 IPR036443 -
Cma09g00521 782 MobiDBLite consensus disorder prediction 214 305 - -
Cma09g00521 782 Pfam Elongation factor Tu C-terminal domain 676 777 IPR004160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00521 Cma-Chr9:2314019 Cma17g00102 Cma-Chr17:495733 6.06E-94 dispersed
Cma09g00521 Cma-Chr9:2314019 Cma15g00437 Cma-Chr15:1959053 1.03E-95 transposed
Cma09g00521 Cma-Chr9:2314019 Cma20g00474 Cma-Chr20:2285299 7.58E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00521 K14416 - csv:101219939 1260.36