Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00521 | ATGCCTCGTAAGGTGAGCTACGGGTTGGATTTCGATGAAGATTACGACGAGTACGACGATTATGATTATTACGACAATGACTTCGACGTAGAAGAAAAAGAGAAGACACCTGAGGCTAAGGAAGGAACAAAGGGGCACAAGCTTTGGCGATGCACGATCTGCACTTACGACAATGAAGACAGTTTTACTGCTTGTGATATATGTGGAGTTCTGCGCATCCCTTTGGTCAACGACAGAAATAATCACGATGATGGAACAGTTGAGAACATTTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTCACCAAATCAGATACCCAAAAGGGAAGTAAAATTTCAAGAGCAGAACGATAAATTTTTGGAGGAAAGAGAAGATAACATCCTCAAGATTGGGAATATCCGGGGCCATTTGCATGAAGTCCATAATGCTTCTAGTACCTATAGTCATGTCCGTACTAATATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAAGGGATTGCGTTCCTCCAAAGTTGATTTAAAAGTCAGCCACAACGACTTCAACTCTTCAATATTATCTTCAGACGTCACTAAGAAGTGTGCAAATAATGAAGTATTGGCTTCAAAAGGTGCACATAGATCGTCTGCTGTATTGCCGACGGGCAAATTAGGCAGTGTAGGAAATACACAGCTGAGTACCAAAAGTTCAGACAACTGGAGCACAACAATTGGAAAAAGTACAGTGGTCACTGAAGAGCATAATACGTCAATTAGTATAACGAAAAATTCACGATCACGTGATAACAGGTCATCAAGCACTTCCACATCAAAATCAGCAGGCAAATTTGAAAGCATGGATGAGAGCAGTAACCGTTCTGTGGAGCAGGAAAAGCCCCAAAGTCTTGCCGGTAGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGTGCCTTACAAGGTTGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACTTATTGGGACGTGTATCCCAGAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGGTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTCGCTTATTTTGATTCTAAAAGATATCATGTAGTTGTACTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCCGGTATGGACAGCTCGAAGGGGCAAACAAGAGAACATGTGCAGTTAATCAGGAGCTTTGGCGTAGATCAGATAATTGTTGCCGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTACAACTTCATTAAACTGCAACTTGGAACCTTTTTTCGTTCTTGTGGTTTTAAAGATTCATCGTTGACTTGGATTCCGTTGAGTGCCATGGCAAATCAGAATCTGGTGAATGCCCCTTCTGATGCTCAATTGTTGTCCTGGTATCGTGGACCTAATCTATTGGAGGCAATCGATTCCCTTCAACCACCCGCTAGAGATTTCTCTAAGCCGCTGCTTATGCCGATATGTGATGTAGTTAGATCGCTTTCACTAGGACAAGTGTCTGCCATTGGCAAGCTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGGCACTGTGCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATTGCAAGAGCGGGGGACAATGTGACTGTTAGTCTACAAGGAGTTGATGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGTCATCCTGATTTTCCTGTTGCTATTGCAAAACATTTGGAATTGAAGATTCTAACCTTGGAACTTGCAACTCCAATATTAATAGGATCTCAGTTGGAAGTTCATATACAACATGTAAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCGTTGCTTGATTCGAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTGTTCTAAGTGCTAAACAGAGTGCAGTGATTGAGGTTATTTTACAAAGCCCAGTTTGTGTTGAAACATTCTCAACTAGTCGAGCTCTCGGGCGAGTATTTCTGAGAGCAATGGGCAGAACCATAGCTGTCGGCATTGTAACCCAACTAATTGGAGACCCTGAATGA | 2349 | 42.61 | MPRKVSYGLDFDEDYDEYDDYDYYDNDFDVEEKEKTPEAKEGTKGHKLWRCTICTYDNEDSFTACDICGVLRIPLVNDRNNHDDGTVENICKDSGVSKMAKSLFASSPNQIPKREVKFQEQNDKFLEEREDNILKIGNIRGHLHEVHNASSTYSHVRTNIVPFKFDIPSPDDVVSKGLRSSKVDLKVSHNDFNSSILSSDVTKKCANNEVLASKGAHRSSAVLPTGKLGSVGNTQLSTKSSDNWSTTIGKSTVVTEEHNTSISITKNSRSRDNRSSSTSTSKSAGKFESMDESSNRSVEQEKPQSLAGSLNNMVLNVKSAYANYISGLGKTSNVPYKVDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYNFIKLQLGTFFRSCGFKDSSLTWIPLSAMANQNLVNAPSDAQLLSWYRGPNLLEAIDSLQPPARDFSKPLLMPICDVVRSLSLGQVSAIGKLEAGALQSGSKVLIMPSGDKGTVRTLERNSQACKIARAGDNVTVSLQGVDASSVMAGGVLCHPDFPVAIAKHLELKILTLELATPILIGSQLEVHIQHVKEAARVARIVSLLDSKTGKVTKKAPRVLSAKQSAVIEVILQSPVCVETFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE | 782 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2314019 | 2320662 | + | CmaCh09G005210.1 | Cma09g00521 | 300526 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00521 | 782 | Pfam | Elongation factor Tu GTP binding domain | 354 | 571 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g00521 | 782 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 40 | 74 | IPR001876 | - | |
Cma09g00521 | 782 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 338 | 585 | IPR027417 | - | |
Cma09g00521 | 782 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 351 | 576 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g00521 | 782 | Gene3D | Translation factors | 672 | 779 | - | - | |
Cma09g00521 | 782 | SUPERFAMILY | Translation proteins | 573 | 668 | IPR009000 | - | |
Cma09g00521 | 782 | MobiDBLite | consensus disorder prediction | 226 | 291 | - | - | |
Cma09g00521 | 782 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 674 | 778 | IPR009001 | - | |
Cma09g00521 | 782 | PRINTS | GTP-binding elongation factor signature | 355 | 368 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g00521 | 782 | PRINTS | GTP-binding elongation factor signature | 414 | 422 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g00521 | 782 | PRINTS | GTP-binding elongation factor signature | 434 | 444 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g00521 | 782 | PRINTS | GTP-binding elongation factor signature | 450 | 461 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g00521 | 782 | PRINTS | GTP-binding elongation factor signature | 495 | 504 | IPR000795 | GO:0003924|GO:0005525 | |
Cma09g00521 | 782 | PANTHER | OS04G0595300 PROTEIN | 51 | 780 | - | - | |
Cma09g00521 | 782 | ProSitePatterns | Zinc finger RanBP2-type signature. | 49 | 68 | IPR001876 | - | |
Cma09g00521 | 782 | PANTHER | TRANSLATION FACTOR | 51 | 780 | - | - | |
Cma09g00521 | 782 | CDD | EF1_alpha | 355 | 574 | - | - | |
Cma09g00521 | 782 | Gene3D | Translation factors | 579 | 668 | - | - | |
Cma09g00521 | 782 | Gene3D | - | 344 | 575 | IPR027417 | - | |
Cma09g00521 | 782 | CDD | HBS1_C_III | 669 | 777 | - | - | |
Cma09g00521 | 782 | Pfam | Elongation factor Tu domain 2 | 600 | 664 | IPR004161 | GO:0005525 | |
Cma09g00521 | 782 | SUPERFAMILY | Ran binding protein zinc finger-like | 45 | 72 | IPR036443 | - | |
Cma09g00521 | 782 | MobiDBLite | consensus disorder prediction | 214 | 305 | - | - | |
Cma09g00521 | 782 | Pfam | Elongation factor Tu C-terminal domain | 676 | 777 | IPR004160 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00521 | Cma-Chr9:2314019 | Cma17g00102 | Cma-Chr17:495733 | 6.06E-94 | dispersed | |
Cma09g00521 | Cma-Chr9:2314019 | Cma15g00437 | Cma-Chr15:1959053 | 1.03E-95 | transposed | |
Cma09g00521 | Cma-Chr9:2314019 | Cma20g00474 | Cma-Chr20:2285299 | 7.58E-96 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00521 | K14416 | - | csv:101219939 | 1260.36 |