Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00522 ATGACGGGGCTAACATGTAATGCTTGTAACAAAGAATTTCTAGACGCCGAGGAGCAAAAGCTTCACTACAAGTCCGAATGGCATCGATACAATCTTAAGCGCAAGGTAGCTAATGTTCCTGGGGTGACAGAGGCATTATTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAGAGAGACCTCGATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCGCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATTACCCGGGTTTCGCAAGGAAGACATGATCAAGAAGTTGAAAAACCAATAATTAAGCCCCTTCCTCAGCGGATTTCCAATAAGGAACCCCAACAGAGTGAGGAGGAAGAGAGTGAGGAGGAGGAGTGGGAAGAAGTTAATCCTGACGAAGACATGATCGATGAGGGTGAGGGTGAGGATGAGGACGATGATATTGATGCCATTGAAGTGGACTTCGATCCATCATGCTGCTTCATGTGTGATCTAAAGCACGACACCATTGATAATTGCATGGTCCACATGCATAAGCAACATGGATTCTTTATTCCTGATGTTGAATATTTGAAGGATCCGAAAGGCTTCCTTACATACCTCGGGCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAATGATAATCGTCTTCCTTTTAGCTGCTTGGAAGCTGTTAGGAAGCACATGGAAGCAAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGACGAGAACGAAGAAGTAGAATTGGAGGAATTTTATGATTACAGCAGCAGTTATGTGGATGGAAGCAACCAGCTGGTACCATCAGGGGCTGGGGACAATTCTGTAAAACTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAAGAACTAACGACCGACAATCGACCAAAACACTTGGTTCTAGACAATTTCTACGTTATTATCGTCAAAAGCCACGACCGTCTCCTGCAAATGATGCGCTCTTAACTGCTGTATTGGCAGCAAGGTACAGGAGCATGGGATTGGCAACTGTCCAGTCAAGAGAAACGATGATCAGGATGAAGGTGATGAAAGAAATGAATCGAACCGGGTTGGAAGCTATGCGTACCAAGATCGGTTTGAAGAACAACGTAATCCGAAACCTGCCAAAGAATGTACCACACTAG 1188 44.78 MTGLTCNACNKEFLDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHITRVSQGRHDQEVEKPIIKPLPQRISNKEPQQSEEEESEEEEWEEVNPDEDMIDEGEGEDEDDDIDAIEVDFDPSCCFMCDLKHDTIDNCMVHMHKQHGFFIPDVEYLKDPKGFLTYLGLKVMRDFRCLYCNDNRLPFSCLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSNQLVPSGAGDNSVKLGSGGAELILVQRTNDRQSTKTLGSRQFLRYYRQKPRPSPANDALLTAVLAARYRSMGLATVQSRETMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPH 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2320813 2323688 - CmaCh09G005220.1 Cma09g00522 300527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00522 395 MobiDBLite consensus disorder prediction 126 153 - -
Cma09g00522 395 Pfam C2H2 type zinc-finger (2 copies) 170 271 IPR041661 -
Cma09g00522 395 PANTHER ZINC FINGER PROTEIN 622 1 394 IPR040025 -
Cma09g00522 395 MobiDBLite consensus disorder prediction 96 110 - -
Cma09g00522 395 PANTHER ZINC FINGER PROTEIN-RELATED 1 394 - -
Cma09g00522 395 SUPERFAMILY beta-beta-alpha zinc fingers 153 224 IPR036236 -
Cma09g00522 395 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cma09g00522 395 MobiDBLite consensus disorder prediction 89 153 - -
Cma09g00522 395 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Cma09g00522 395 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676|GO:0008270
Cma09g00522 395 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Cma09g00522 395 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Cma09g00522 395 SMART c2h2final6 219 246 IPR013087 -
Cma09g00522 395 SMART c2h2final6 4 28 IPR013087 -
Cma09g00522 395 SMART c2h2final6 168 191 IPR013087 -
Cma09g00522 395 SMART c2h2final6 69 93 IPR013087 -
Cma09g00522 395 SUPERFAMILY beta-beta-alpha zinc fingers 68 102 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00522 Cma-Chr9:2320813 Cma09g01069 Cma-Chr9:5618308 3.93E-06 dispersed
Cma01g01546 Cma-Chr1:10788885 Cma09g00522 Cma-Chr9:2320813 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00522 K14816 - csv:101219700 668.692