Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00530 | ATGGCGGTCGATCTTGTGAGTTTTCCTAAGATTGATGATCAGATGGTTATACAGGAAGCTGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCACAAGAAAACTTCAAACCATGGCGATTGCTCTGACCTAACCGATGCAACTGTTCTGAAGCTTAAGAAAGCGATCTCTCTCCTTAATCGGACTGGTCACGCTAGGTTCCGGCGAGGTCCGGTTTCTTCTGCCTTCTCATCGCCGATATCCGGTTCATTTCCTCATCTCTCTGTTCCTCAAGATCAGACGATGAATCTCGCTCCTTCTCTGTTTACTTCGCCGGCAACGATTTCTGCTCCGCCGCAGGCGAATATCATCTCGGCAGCGGCGAACTTGCCTCAGTCGCAGCCTCAGAGTTTGACTCTTGATTTCACCAGGCCGAATATTTTGAACCCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGAAACCTTCAGCGTCTCTTCCAGTTCCTCTTTTAAGTCCTCTGCCATTACCGGAGACGGAAGCGTATCCAACGGAAAAGTAGGAACGGCCTTGTTTCTGGCACCGGCACCGACTGCTTCCGGTGGAAAACTGCCGCTCTCTGCGGAGGCGTGCAAGAAGAAGTGTCACGAACAAGATCATTCCGAAGATTTGTCCGGGATAATCTCTGGATCGAAATCTGGTTCCGGCAAGTGCCATTGCTCAAAGAAAAGAAAAAATCGTATGAAGAAGACGATTCAGATCCCGGCTATTAGTTCGAAAATCGCCGACATTCCAACGGACGAGTTCTCGTGGAGGAAATACGGCCAGAAGCCGATAAAGGGATCTCCATACCCGCGAGCATATTATAAGTGTAGCACGATGAGGGGATGTCCGGCAAGGAAGCACGTGGAGAGAAATCCGAAGGATCCAGCGATGTTGATTATTACGTATGAAGGGGAGCACCGCCATACGCCGAGCTCGTTTCTGGAAAATAGGGCCGCCGGAGTGTCTTTAGCCTTGGACTCAACTTGA | 1029 | 49.37 | MAVDLVSFPKIDDQMVIQEAASQGLKSMEHLIRLLSHKKTSNHGDCSDLTDATVLKLKKAISLLNRTGHARFRRGPVSSAFSSPISGSFPHLSVPQDQTMNLAPSLFTSPATISAPPQANIISAAANLPQSQPQSLTLDFTRPNILNPNPKGTDLEFSKETFSVSSSSSFKSSAITGDGSVSNGKVGTALFLAPAPTASGGKLPLSAEACKKKCHEQDHSEDLSGIISGSKSGSGKCHCSKKRKNRMKKTIQIPAISSKIADIPTDEFSWRKYGQKPIKGSPYPRAYYKCSTMRGCPARKHVERNPKDPAMLIITYEGEHRHTPSSFLENRAAGVSLALDST | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2358729 | 2360437 | - | CmaCh09G005300.1 | Cma09g00530 | 300535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00530 | 342 | SMART | WRKY_cls | 264 | 324 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00530 | 342 | Pfam | Plant zinc cluster domain | 211 | 262 | IPR018872 | - | |
Cma09g00530 | 342 | PANTHER | WRKY TRANSCRIPTION FACTOR 17-RELATED | 9 | 332 | - | - | |
Cma09g00530 | 342 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 9 | 332 | IPR044810 | GO:0003700 | |
Cma09g00530 | 342 | Pfam | WRKY DNA -binding domain | 266 | 322 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00530 | 342 | SUPERFAMILY | WRKY DNA-binding domain | 262 | 323 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00530 | 342 | Gene3D | WRKY domain | 251 | 325 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma09g00530 | 342 | ProSiteProfiles | WRKY domain profile. | 259 | 325 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01575 | Cma09g00530 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00963 | Cma-Chr3:6836165 | Cma09g00530 | Cma-Chr9:2358729 | 1.01E-67 | dispersed | |
Cma09g00530 | Cma-Chr9:2358729 | Cma20g00968 | Cma-Chr20:4913335 | 1.29E-63 | dispersed | |
Cma10g00364 | Cma-Chr10:1677276 | Cma09g00530 | Cma-Chr9:2358729 | 2.02E-72 | dispersed | |
Cma01g01575 | Cma-Chr1:10882048 | Cma09g00530 | Cma-Chr9:2358729 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35615 | PF03106 | WRKY | 1.00E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00530 | - | - | bhj:120087087 | 507.294 |