Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00530 ATGGCGGTCGATCTTGTGAGTTTTCCTAAGATTGATGATCAGATGGTTATACAGGAAGCTGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCACAAGAAAACTTCAAACCATGGCGATTGCTCTGACCTAACCGATGCAACTGTTCTGAAGCTTAAGAAAGCGATCTCTCTCCTTAATCGGACTGGTCACGCTAGGTTCCGGCGAGGTCCGGTTTCTTCTGCCTTCTCATCGCCGATATCCGGTTCATTTCCTCATCTCTCTGTTCCTCAAGATCAGACGATGAATCTCGCTCCTTCTCTGTTTACTTCGCCGGCAACGATTTCTGCTCCGCCGCAGGCGAATATCATCTCGGCAGCGGCGAACTTGCCTCAGTCGCAGCCTCAGAGTTTGACTCTTGATTTCACCAGGCCGAATATTTTGAACCCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGAAACCTTCAGCGTCTCTTCCAGTTCCTCTTTTAAGTCCTCTGCCATTACCGGAGACGGAAGCGTATCCAACGGAAAAGTAGGAACGGCCTTGTTTCTGGCACCGGCACCGACTGCTTCCGGTGGAAAACTGCCGCTCTCTGCGGAGGCGTGCAAGAAGAAGTGTCACGAACAAGATCATTCCGAAGATTTGTCCGGGATAATCTCTGGATCGAAATCTGGTTCCGGCAAGTGCCATTGCTCAAAGAAAAGAAAAAATCGTATGAAGAAGACGATTCAGATCCCGGCTATTAGTTCGAAAATCGCCGACATTCCAACGGACGAGTTCTCGTGGAGGAAATACGGCCAGAAGCCGATAAAGGGATCTCCATACCCGCGAGCATATTATAAGTGTAGCACGATGAGGGGATGTCCGGCAAGGAAGCACGTGGAGAGAAATCCGAAGGATCCAGCGATGTTGATTATTACGTATGAAGGGGAGCACCGCCATACGCCGAGCTCGTTTCTGGAAAATAGGGCCGCCGGAGTGTCTTTAGCCTTGGACTCAACTTGA 1029 49.37 MAVDLVSFPKIDDQMVIQEAASQGLKSMEHLIRLLSHKKTSNHGDCSDLTDATVLKLKKAISLLNRTGHARFRRGPVSSAFSSPISGSFPHLSVPQDQTMNLAPSLFTSPATISAPPQANIISAAANLPQSQPQSLTLDFTRPNILNPNPKGTDLEFSKETFSVSSSSSFKSSAITGDGSVSNGKVGTALFLAPAPTASGGKLPLSAEACKKKCHEQDHSEDLSGIISGSKSGSGKCHCSKKRKNRMKKTIQIPAISSKIADIPTDEFSWRKYGQKPIKGSPYPRAYYKCSTMRGCPARKHVERNPKDPAMLIITYEGEHRHTPSSFLENRAAGVSLALDST 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2358729 2360437 - CmaCh09G005300.1 Cma09g00530 300535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00530 342 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma09g00530 342 Pfam Plant zinc cluster domain 211 262 IPR018872 -
Cma09g00530 342 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 9 332 - -
Cma09g00530 342 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 332 IPR044810 GO:0003700
Cma09g00530 342 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma09g00530 342 SUPERFAMILY WRKY DNA-binding domain 262 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma09g00530 342 Gene3D WRKY domain 251 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma09g00530 342 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01575 Cma09g00530 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00963 Cma-Chr3:6836165 Cma09g00530 Cma-Chr9:2358729 1.01E-67 dispersed
Cma09g00530 Cma-Chr9:2358729 Cma20g00968 Cma-Chr20:4913335 1.29E-63 dispersed
Cma10g00364 Cma-Chr10:1677276 Cma09g00530 Cma-Chr9:2358729 2.02E-72 dispersed
Cma01g01575 Cma-Chr1:10882048 Cma09g00530 Cma-Chr9:2358729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35615 PF03106 WRKY 1.00E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00530 - - bhj:120087087 507.294