Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00533 ATGTCTCGTGTATATGTTGGGAATTTGGATCCAAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGCGTGTTTGGAGTTATTCGAAGCGTATGGGTTGCACGGAGACCCCCAGGTTATGCGTTTATAGATTTTGATGATACCAGAGATGCACGGGATGCAATCCATGAATTGGATGGGAAGAATGGCTGGAGAGTTGAGCTTTCTCACAATTCTAGAGGTGGTGGTGGAGGCCGTGGAGGGGGCCGTGGTCGTTCTGGCGGCGGTTCTGATCTGAAATGCTATGAGTGTGGTGAGCCTGGCCATTTTGCTCGTGAGTGCCGTTTACGTGGTGGCGGTGGCGGTGGAGGTGGTGGTGCTGGTAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCCCATGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGGCGTAGCTATAGCAAATCACCTCCCTACCGTGGTAGAGAGGAGCTACCTTATGCCAATGGGATGCAGAAATGGCATAAAGGATCGTCGTCGGAGCAGGAGCTGAGGACCACTGACTTCTCAACCTGCCTTAGTTTACACAGGATGTTTAAAGGATTACTCCGGTTCTATGTGTTTTTAGTGCTTGGACTTCGTAACAGACCATTTTAA 678 51.47 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDARDAIHELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGGSDLKCYECGEPGHFARECRLRGGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPHGRSPRRRSLSPRGRSYSKSPPYRGREELPYANGMQKWHKGSSSEQELRTTDFSTCLSLHRMFKGLLRFYVFLVLGLRNRPF 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2376770 2380593 + CmaCh09G005330.1 Cma09g00533 300538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00533 225 Pfam Zinc knuckle 93 108 IPR001878 GO:0003676|GO:0008270
Cma09g00533 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Cma09g00533 225 SUPERFAMILY RNA-binding domain, RBD 3 88 IPR035979 GO:0003676
Cma09g00533 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Cma09g00533 225 MobiDBLite consensus disorder prediction 66 89 - -
Cma09g00533 225 Gene3D - 1 73 IPR012677 -
Cma09g00533 225 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 181 - -
Cma09g00533 225 ProSiteProfiles Zinc finger CCHC-type profile. 93 108 IPR001878 GO:0003676|GO:0008270
Cma09g00533 225 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 181 - -
Cma09g00533 225 SMART rrm1_1 3 69 IPR000504 GO:0003723
Cma09g00533 225 MobiDBLite consensus disorder prediction 110 188 - -
Cma09g00533 225 CDD RRM_SRSF3_like 3 71 - -
Cma09g00533 225 SUPERFAMILY Retrovirus zinc finger-like domains 84 109 IPR036875 GO:0003676|GO:0008270
Cma09g00533 225 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Cma09g00533 225 Gene3D - 81 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00533 K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7 - csv:101217802 217.238
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01578 Cma09g00533 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01717 Cma-Chr4:8643578 Cma09g00533 Cma-Chr9:2376770 1.61E-58 dispersed
Cma09g00533 Cma-Chr9:2376770 Cma18g00809 Cma-Chr18:7074572 1.19E-40 dispersed
Cma01g01578 Cma-Chr1:10902600 Cma09g00533 Cma-Chr9:2376770 1.78E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g661 . . . . . Bpe02g00223 . . . . Cma01g01578 . . . . . . . . . . . . . . . . . . . . Cone4ag1864 Cone7ag1771 . . . Csa03g04411 Chy04g00289 . . . . . . . . . . . . Cma09g00533 . . . . . . . . . . . . . . . . . . . . . . Cme04g00330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00533 Cma_Chr09 FPKM 19.90979 22.963463 26.862249 26.430286 39.685688 37.542145 39.188679 26.403563 27.448929 29.992321