Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00534 ATGGCTCCTAGATTGGGGTTTCTGTGTCGGTGGGGAAAAGAGAAAGATCCTCAAAAAGGAACTCCGGTGGTTGTGACGATGGAGAAGCCTAACTTCTCCGTCGTGGAGATCGACGGTCCCGACGCCGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATACCAAACAGGTCACGTGGATTCTTCTTCTAAAGGCCAATCGAGCCGTCGGTTGCATAGCTTGGCTTGTTACAGTTCTCTGGACATTGTTGGGAACAATCAAGAAGAGGCTGATCTACCGGCAAGGAATCGCCATTGAAGGCGGGAAGCTGGGAAGAGGGAAGTTACTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATTGGGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGCATTCTAATCTGCATATTCCTCAGGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTGTAGAGCAGAGTACATTGCTCCTCTCATTCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCGGTGGATCGTATGATCCTTTGTTTTGGTTGCCTATGGATAAAGTACAAAAGAATTGAACCCAAGATTGAAGGGGATCCCTTCAGGTCGGATGATGTGGAGGGAGGTGGATACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAACGGGAGGTCTATGAGCAGTCTATCTCTGCAGTCTGTCAGATTGACTGGCCAAGGGACCATTTACTCATTCAAGTTCTTGATGATTCTGATGATGAGAACATCCAACTGTTAATTAAGGCTGAGGTTGCTAAATGGAGCCATAAGGGGGTGAACATAGTCTATCGCCATCGATTAGTAAGAACGGGATATAAAGCTGGGAATCTGAAATCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTTGCAATTTTCGACGCTGACTTTCAACCTAATCCGGATTTTCTAAAGCTGACCGTCCCCCATTTCAAGGATAACCCAGAGCTAGGTTTGGTCCAGGCCAGATGGTCGTTTGTGAACCGGGACGAGAACTTGTTGACACGCCTTCAAAACATTAACTTGTGTTTCCACTTTGAGGTCGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAGGCACTCGAGGAGTCCGGAGGGTGGCTTGAAAGAACGACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTCGTATTTCTAAATGACGTTAAGGTCCTTTGTGAAGTTCCCGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGATTGTCCCTTCCAGCAGTCATAAGTTCTAAGATATCAGCATGGAAGAAGGCAAATTTGATACTATTGTTCTTTCTATTAAGGAAGCTTATCCTCCCATTCTATTCCTTCACGTTGTTCTGCATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTACGTGCCCATCTTCATGTCGTTACTCAACATTCTTCCATCTCCAAAATCATTTCCTTTTATTGTCCCCTACCTTCTTTTTGAAAACACCATGTCCGTAACCAAATTCAATGCCATGGTGTCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACCAAAAAGGCTGGCAGATCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGATAACGAATCAAGCGCAGATATATAGAGGCGCTTCGGAGAGCGAGATTTCCGAGTTGACCCACTTAAAGGAGGGCAAAGAAGTCGTCTCTGCACCTGTCAAAAAAGTAAACAAGTTATATCGAAAAGAGCTAGCGCTCGCGTGTCTTTTACTTTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACATTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 44.44 MAPRLGFLCRWGKEKDPQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNTKQVTWILLLKANRAVGCIAWLVTVLWTLLGTIKKRLIYRQGIAIEGGKLGRGKLLFGVIRVFLVTSIGILAFEMLAYFKGWHYFQHSNLHIPQASELQGLLHSLYVAWLTCRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFRSDDVEGGGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDENIQLLIKAEVAKWSHKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLSLPAVISSKISAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPIFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKITNQAQIYRGASESEISELTHLKEGKEVVSAPVKKVNKLYRKELALACLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2381792 2385780 - CmaCh09G005340.1 Cma09g00534 300539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00534 695 PANTHER - 13 695 - -
Cma09g00534 695 Pfam Glycosyl transferase family group 2 324 532 IPR001173 -
Cma09g00534 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 531 IPR029044 -
Cma09g00534 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 225 449 IPR029044 -
Cma09g00534 695 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 13 695 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01581 Cma09g00534 CCT
Cma01g01581 Cma09g00534 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01758 Cma-Chr1:11830948 Cma09g00534 Cma-Chr9:2381792 0 dispersed
Cma04g02723 Cma-Chr4:18357447 Cma09g00534 Cma-Chr9:2381792 0 dispersed
Cma09g00311 Cma-Chr9:1283079 Cma09g00534 Cma-Chr9:2381792 0 dispersed
Cma09g00534 Cma-Chr9:2381792 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma01g01581 Cma-Chr1:10915923 Cma09g00534 Cma-Chr9:2381792 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00534 - - csv:101217415 1304.27