Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00537 ATGAGGCAGCTTCAGAGGAGCTTGTTCATGGCCACTACTTCCAGCAACGCTGTTTCTTCCTCTGTATTTTCAACAACTCCGTCTGCTTCGTTCTCGCGACTCCGTCCTTTGATGGCTAAGTTGCAGAGTAGGACTTCTCAAAATAATACTAGCAAATGCATACCCGTTTTACCTTTTTCCACTGTTTGTAATTACGCCAAATGTTCTCAGCTTGTTTTTAGAAAAAGCAGAGTAACATTTGCTGTCAAGACTGAACGTGCAAAGGCTGGGCAGTGTCGTACATGTGATGGGCCAAGTTGTGTTTTCACTCTACATTCCCGCTTACCATTGGGATTTCATCATTCTGTTGCATCCCCAAATGCTTCTAAGCGACAGGTGTTAAATGGCACTTTTACACCTACATTTCCTAATTATAGAGCTTTTGAAAAGAAGTTCTTTTCTCAATCTACAGAAGCATTGAATAAAACTGAGAATGAGAATGTTAAATATGCAAGTAATGGAACAAGTACATTCCCATTTGAAGGATTGAATAAAAAATGGAAGGGTGCCAAGCCTGTTGCTACATCCAGGAAAAAGCAAATTAGTGCTTCAGGGTCCACAGGCTCCACTAGTGTTGTTGGAACAAATTCAAGCGATCAGTTGGTTGGAGTTACCAAGGAGGCAGGTCTAGTTTCATCTAATTCTTCTTCATCCGTTAGGAAAGCATCCAAGGGTTTGAAAGAAAAGAACTCTGGGAGCAAGAAAAAGAAGGAAGCTATATCTCCAACCAATTCTTCAGATGTTGAAGCAGTATGCAAGGATAGTCAGTCAAAGAGCTTAGATAGTAGTAATGTTGATAAGAATGTTGTACAAAATCCGAAGAAAAAATCATCGGGGGGTACTGCCAAAGGTTCTGTTTCAACTACACAACAATCTAACAAGAAAAAAGGTAACTCTAGCAGAAAAAAAGAAGCTCAGAAAGATGCTAGTAAGTTGCCACAGAAGCCAAACCTTGTAGTGGATGCAAGGGGGAAATCTCAGGGAATAACAACTTTGAAGCAGCTATATCCCCCAATGGGGAAGTCTGTTATGGTGGTGGAATCTGTTACAAAGGCAAAGGTTATTCAGAATTATCTTGGTGATATGTTTGAGGTGCTACCTAGTCATGGCCATGTTAGAGACTTGGCTGCAAGGTCAGGATCTGTTAGACCTGATGATGACTTCAGTATGGTGTGGGAGGTTCCTTCTGCTGCCTGGACTCATCTCAAGAGCATGAAAGTTTCCTTAAATGGAGCAGAGAACCTTATTCTTGCATCTGATCCTGATCGTGAAGGCGAGGCTATTGCTTGGCATATAATTGAGATGTTGCAGCAGCAGGATGCTCTACATGAAGGTATTAGCATAGCGAGGGTTGTTTTTCATGAAATAACTGAGGCTTCTATCAAAAGTGCCCTGCAATCTCCTAGAGGAATTGATGCAAACTTGGTTCAGGCTTACCTTGCACGGCGTGCTTTAGATTATTTGATTGGATTTAATATTTCACCATTATTATGGAGGAAATTACCAGGTTGTCAATCAGCTGGGCGTGTTCAGTCAGCTGCACTCGCCCTAATATGTGATAGAGAATTGGAAATTGAAGAATTTCAACCACAAGAATATTGGACTATTGACATTGAGTTGAACCAAAAAGATCCTTGTTCTTCAGTGGAAGAATTTACAGTCCCTGCACATTTGACCCATTTTGATTCTAAGAAGTTAAATCAGTTTGCAATTAGCTCCACCACAGAGGCAAAGAATATAGAAACTGCACTAAAGTCAGTAAATTTTCAAGTTCTTAGCTCTAAAAAGAATAAAGTGCGGAGAAACCCTCCAATGCCATATATAACATCTACACTTCAGCAAGATGCAGCAAACAAACATAATTTTCCTGCAAGTTACACAATGAAGCTTGCCCAGAAACTTTACGAGGGAATTCAACTTGCTGATGGAAAGGCAGCTGGCTTAATAACTTATCCAAGAACAGATGGGCTACATATCTCTGATGAAGCTGTTAAGGACATTCGCTCCTTGATTAAGCAAAGATACGGGGATAACTTCGTCTCAGAAAGTGCACGCAAATATTTTAAAAAGGTCAAGAATGCTCAAGAGGCTCATGAAGCAATCAGACCCACTGATGTGCAACGATTACCCTCAATGCTAGTGGGAACACTTGACGAAGATTCTCACAAACTATACTCTCTTATTTGGCTCAGAACGATGGCATGTCAAATGGAACCTTCTATCACTGAACAGATTCAAATTGACAGTGGACTTGCGGATGAGTCCATCATTTTCCGATCTACATGCTCAAGAGTTCAATTTCGTGGCTTTCAAGAAGTTTTTGAGGATCCAGAAGTTGATGCAATCAGACATAAAGACCATGAAGAAAATGAACGGGACGAACTGTTTAGAATTCTTAATGCACTGAAGTCAGGGGATCAATTGTCTCTAGCTGCAGTTGAACTCAAGCAACATTTTACCCAGCCCCCTCCTCGCTATTCGGAGGGAACATTGGTTAAGAAGATGGAGGAGCTAGGGATTGGGAGACCTTCCACATATGCAAGCACATTAAAAGTTTTACAGGACAGGAACTACTTGTCAGTGAAAAGTCGTGTTTTACATCCAGAGTTTCGTGGGCGCATGGTGTCGGCATTTCTCTGTCATCATTTCTCCGAGGTCACTGATTATAGTTTTACTGCTGACATGGAAAATGAGCTTGATAACGTCTCTGCTGGTTTAACTGAATGGAAAGGCCTCCTAAGAGATTATTGGACACGGTTCAGCACATATTGTGAACGTGCTAATAATGTTCATATTCATCAGGTGGAAAAGATGCTGGAGAAGAAATATGAGGACTTCTTATTTTCTTTTCTTCCTGATAATTGTAGAACATGTCCAAGTTGTTTGGAGGGCACTCTGATCTTCAAAGTTAGTCGGTATGGTGCAGGCTATTTCATAGGTTGTGATCAACACCCAAGATGCAAATATATTGCAAAAACATTATATGGTGAGGATGAAGAAGAAGTTACTCCTCAAAATAACCAGAGTGTGGAAGAGCCAAAATTGCTTGGTCTTCATCCAGTTTCTAGTGAAAAGATTCTTTTGAAGAGTGGTCCATATGGGTTTTATGTGCAGCTTGGTGAGGACAGGAAAGGGTACATGCCCAAAAGAACCTCTGTTTCCCAGATAAAGGACGTGGGCTCTATTACTCTTGAGGACGCCCTCGAACTATTACGCTACCCAATTACTTTGGGAAACCATCCAAAGGATGGTCATCGAGTGTTAATAAAGATCACGAAAGCTGGGTTCACAGTTAGGCATCGACGCACGATAGCTTCCGTTCCCAAGAACTTGAAGCCGAATGATGTCGATTTAGCGAAAGCGTTGGAGCTTCTGTCGAGCAAAGATGTTAGAAGGTGTGGGCGACCGAAAAGCAAACCAAAAGTTGAGGAAGCTGTTGAAGCCATTTAG 3489 41.39 MRQLQRSLFMATTSSNAVSSSVFSTTPSASFSRLRPLMAKLQSRTSQNNTSKCIPVLPFSTVCNYAKCSQLVFRKSRVTFAVKTERAKAGQCRTCDGPSCVFTLHSRLPLGFHHSVASPNASKRQVLNGTFTPTFPNYRAFEKKFFSQSTEALNKTENENVKYASNGTSTFPFEGLNKKWKGAKPVATSRKKQISASGSTGSTSVVGTNSSDQLVGVTKEAGLVSSNSSSSVRKASKGLKEKNSGSKKKKEAISPTNSSDVEAVCKDSQSKSLDSSNVDKNVVQNPKKKSSGGTAKGSVSTTQQSNKKKGNSSRKKEAQKDASKLPQKPNLVVDARGKSQGITTLKQLYPPMGKSVMVVESVTKAKVIQNYLGDMFEVLPSHGHVRDLAARSGSVRPDDDFSMVWEVPSAAWTHLKSMKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHEGISIARVVFHEITEASIKSALQSPRGIDANLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDRELEIEEFQPQEYWTIDIELNQKDPCSSVEEFTVPAHLTHFDSKKLNQFAISSTTEAKNIETALKSVNFQVLSSKKNKVRRNPPMPYITSTLQQDAANKHNFPASYTMKLAQKLYEGIQLADGKAAGLITYPRTDGLHISDEAVKDIRSLIKQRYGDNFVSESARKYFKKVKNAQEAHEAIRPTDVQRLPSMLVGTLDEDSHKLYSLIWLRTMACQMEPSITEQIQIDSGLADESIIFRSTCSRVQFRGFQEVFEDPEVDAIRHKDHEENERDELFRILNALKSGDQLSLAAVELKQHFTQPPPRYSEGTLVKKMEELGIGRPSTYASTLKVLQDRNYLSVKSRVLHPEFRGRMVSAFLCHHFSEVTDYSFTADMENELDNVSAGLTEWKGLLRDYWTRFSTYCERANNVHIHQVEKMLEKKYEDFLFSFLPDNCRTCPSCLEGTLIFKVSRYGAGYFIGCDQHPRCKYIAKTLYGEDEEEVTPQNNQSVEEPKLLGLHPVSSEKILLKSGPYGFYVQLGEDRKGYMPKRTSVSQIKDVGSITLEDALELLRYPITLGNHPKDGHRVLIKITKAGFTVRHRRTIASVPKNLKPNDVDLAKALELLSSKDVRRCGRPKSKPKVEEAVEAI 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2394093 2408201 + CmaCh09G005370.1 Cma09g00537 300542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00537 1162 Pfam Toprim domain 356 469 IPR006171 -
Cma09g00537 1162 Gene3D - 351 490 - -
Cma09g00537 1162 ProSiteProfiles Toprim domain profile. 354 469 IPR006171 -
Cma09g00537 1162 MobiDBLite consensus disorder prediction 256 308 - -
Cma09g00537 1162 PANTHER BNAA01G05990D PROTEIN 217 1155 - -
Cma09g00537 1162 MobiDBLite consensus disorder prediction 222 337 - -
Cma09g00537 1162 SMART topIaneu2 608 889 IPR003602 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 Gene3D Topoisomerase I, domain 3 540 836 IPR013825 -
Cma09g00537 1162 Pfam Topoisomerase C-terminal repeat 1032 1089 IPR025589 -
Cma09g00537 1162 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 217 1155 IPR000380 GO:0003677|GO:0003917|GO:0006265
Cma09g00537 1162 Pfam DNA topoisomerase 484 925 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 Hamap DNA topoisomerase 1 [topA]. 354 1114 IPR028612 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 645 668 IPR023406 GO:0003917
Cma09g00537 1162 SMART toprim5 354 454 IPR006171 -
Cma09g00537 1162 Gene3D Topoisomerase I, domain 4 616 752 IPR013826 -
Cma09g00537 1162 CDD TOP1Ac 487 934 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 MobiDBLite consensus disorder prediction 190 209 - -
Cma09g00537 1162 MobiDBLite consensus disorder prediction 184 209 - -
Cma09g00537 1162 Gene3D Topoisomerase I, domain 2 494 930 IPR013824 -
Cma09g00537 1162 CDD TOPRIM_TopoIA_TopoI 354 481 IPR034149 -
Cma09g00537 1162 TIGRFAM topA_bact: DNA topoisomerase I 357 1004 IPR005733 GO:0003677|GO:0003917|GO:0006265
Cma09g00537 1162 PRINTS Prokaryotic DNA topoisomerase I signature 428 441 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 PRINTS Prokaryotic DNA topoisomerase I signature 518 536 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 PRINTS Prokaryotic DNA topoisomerase I signature 659 668 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 PRINTS Prokaryotic DNA topoisomerase I signature 737 753 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 PRINTS Prokaryotic DNA topoisomerase I signature 852 866 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 SMART topIban2 460 548 IPR003601 GO:0003677|GO:0003916|GO:0006265
Cma09g00537 1162 SUPERFAMILY Prokaryotic type I DNA topoisomerase 354 977 IPR023405 -
Cma09g00537 1162 Coils Coil 1155 1162 - -
Cma09g00537 1162 MobiDBLite consensus disorder prediction 235 255 - -
Cma09g00537 1162 Gene3D Bacterial Topoisomerase I, domain 1 964 1049 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00537 - - - csv:101210581 1761.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01584 Cma09g00537 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00460 Cma-Chr14:2196260 Cma09g00537 Cma-Chr9:2394093 9.09E-25 transposed
Cma14g01522 Cma-Chr14:11518604 Cma09g00537 Cma-Chr9:2394093 3.51E-18 transposed
Cma01g01584 Cma-Chr1:10927593 Cma09g00537 Cma-Chr9:2394093 6.29E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g248 . . . . . Bpe02g00226 . . . . Cma01g01584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01631 . Cma09g00537 . . . . . . . . . . . . . . . . . . . . . . Cme04g00321
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006908 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00537 Cma_Chr09 FPKM 7.312401 6.953068 7.047193 8.234255 18.932079 18.332382 19.691868 13.706703 14.191287 13.784679