Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00539 ATGTGGTTACCAAGATACGGGCTTGACAGGAAAGAGAAACTGGATGTGAAGGGAATTGTGGCAGTGGCAATTGACAGAGACAAAGGAAGCCAAGGGGCTCTCAAATGGGCCATTGATTATTTGCTTCAAAGAGGACAATCAGTTTTCCTCATTCATGTCAAACTCAGATCCCCTTCTAATTCTTCCCAAAAGATGAGCTCTAAATCTGACTCTGAAGCCAGCATCAAAGAATTATTCCTTCCTTTTCGTTGCTTTTGTACTCGGAAGGATATACAATGCATGGATGTTGTGTTGGAAGATACAGATGCAGCAAGGGCCATAATTGAGTATGCAGCAAATAAGGCCATAGAGAACATTGTTTTGGGCGCTTCAGCAAAATCTGGCTTCTTAAGATTCAAGACAAACGATGTTCCTGGCAGTGTAGTAAAAGGAGCACCAGATTTTTGTAATGTGTTTGTCATTTCTAAAGGGAAAGTTCAATCGATGCGTTCGGCGTCTCGTCCCGCTCCAGTGATTAGTCCTCTACGAGGTCAATTAGCTCAACAAAGCAGCCCGAAATCCGATACGCCCGAGATCCAGATGACTCACTCTGCCAGTGCAAGAGCGTCTGCGGATAGGCCCCCCCTTGATCTGCCATGTAATCTGCCATGTAATCTGCCATGTAATCTGCCAAGTAAAGTGCAGGATGAGACCGATTTCATGAGGTCACCATTCACAAGGAAAGGATATAATTACAAACCATCATCACCGACGCAAGAATCGGATATATCTTTCGTTAGCTCCGGAAGACTGAGCATCGATCGTATATTTCCTTGTAGTCAAGATACAGGAGGAAGAGCCACACCACCACAGGTTTCAAGCAGTACAGATTTTGACTTATCTCATAGCTTTGAGTCTCTACAGATGGGACGGATGTCAGCGGATATGAACTTTTCGTCCGAGTTCTCTTCGATCTCGCAAGACAGTGACAGACTTTCGATCTCATCACAGTCTATGGAAGACGTCGAGGCCGAGATGCGGAGGCTCAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGCACAGCCTGCAAGGAAGCTCTTACAGCCAAACAAAAGACAGTCGAGCTACAACGATGGAAATTAGAAGAAGAACAGAGATTAGAGGAGGCGAGATTGGCCGGGGAAGCTGCATTGGCGCTAGCAGAACAGGAGAAGTTGAAGTCGAAAGCAGCCATCGAGGCAGCTGAAGCGGCTCGGAGAATTGCAGAATTGGAAGGACAGAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAGCTGAGGAGAAGAAAAAGGCAGTTGATGCATTGGCAAACAATGATATCAGGTATAGGAAGTATACAATCGACGAGATCGAAGTGGCAACGGAATTCTTTGCTGAATCTCGTAAGATCGGAGAAGGAGGCTATGGTCCTGTTTACAGGTGTAATCTTGATCATACTCCGGTTGCCATTAAGGTTCTACGTCCCGATGCGACTCAAGGACGATCACAGTTTAAACAAGAGGTAGAAGTACTCAGCTGTATACGTCATCCGAACATGGTTCTCCTCCTTGGAGCTTGCCCCGAGTATGGCTGCTTGGTCTATGAGTACATGGCTAATGGGAGCTTAGAAGACCGACTTCTTCGACGAGGAAACACGCCACCACTTTCTTGGCAGCTCAGGTTCAAAATTGCAGCTGAAATTGGGACAGCATTGCTGTTCTTGCACCAAACAAAGCCAGAGCCTCTTGTGCACCGTGATCTCAAACCGGCTAACATTCTGCTCGATCGTAACTTCGTCAGTAAGATCAGTGATGTTGGCTTGGCTAGGCTCGTACCGCCATCGATTGCTAATAGTGTAACACAATATCGAATGACATCGACCGCTGGAACATTTTGCTACATTGATCCCGAGTATCAGCAGACAGGTATGCTTGGTGTGAAATCCGACATATACTCGCTAGGCATCATGTTTCTCCAACTGATCACTTCTAGGCCACCAATGGGATTGACTCACCATGTCGAAAGAGCTATCGAGAAGGGGACGTTCGAAACTATTCTCGACCCAGCCGTCCTTGATTGGCCTATTGAAGAAGCTTTGTGTTTCGCCAAGATGTCACTCAAGTGTGCCGAGTTACGACGTAAAGATAGGCCTGATCTTGGTAAGGCCATCCTTCCAGAGCTTAACAGGTTGAGAACTTTTGCAGAAGATACAACGCACCCAACACTGATGGGGGGAGACACGAGCCCCTCTCGCAGCAACAGCCAAGTTTCTTTACAATTTGGATCATCACCGCAATCATACAACAGCTCGAGAAACCCATCGACAACTTTTTGA 2340 46.32 MWLPRYGLDRKEKLDVKGIVAVAIDRDKGSQGALKWAIDYLLQRGQSVFLIHVKLRSPSNSSQKMSSKSDSEASIKELFLPFRCFCTRKDIQCMDVVLEDTDAARAIIEYAANKAIENIVLGASAKSGFLRFKTNDVPGSVVKGAPDFCNVFVISKGKVQSMRSASRPAPVISPLRGQLAQQSSPKSDTPEIQMTHSASARASADRPPLDLPCNLPCNLPCNLPSKVQDETDFMRSPFTRKGYNYKPSSPTQESDISFVSSGRLSIDRIFPCSQDTGGRATPPQVSSSTDFDLSHSFESLQMGRMSADMNFSSEFSSISQDSDRLSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKTVELQRWKLEEEQRLEEARLAGEAALALAEQEKLKSKAAIEAAEAARRIAELEGQKRMKAEMKALKEAEEKKKAVDALANNDIRYRKYTIDEIEVATEFFAESRKIGEGGYGPVYRCNLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLLRRGNTPPLSWQLRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIANSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGTFETILDPAVLDWPIEEALCFAKMSLKCAELRRKDRPDLGKAILPELNRLRTFAEDTTHPTLMGGDTSPSRSNSQVSLQFGSSPQSYNSSRNPSTTF 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2408437 2413525 - CmaCh09G005390.1 Cma09g00539 300544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00539 779 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 14 768 - -
Cma09g00539 779 MobiDBLite consensus disorder prediction 176 200 - -
Cma09g00539 779 SUPERFAMILY Protein kinase-like (PK-like) 449 723 IPR011009 -
Cma09g00539 779 Gene3D Transferase(Phosphotransferase) domain 1 539 743 - -
Cma09g00539 779 PANTHER OS02G0152300 PROTEIN 14 768 - -
Cma09g00539 779 CDD STK_N 19 157 - -
Cma09g00539 779 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 154 - -
Cma09g00539 779 Gene3D Phosphorylase Kinase; domain 1 444 538 - -
Cma09g00539 779 MobiDBLite consensus disorder prediction 176 206 - -
Cma09g00539 779 ProSiteProfiles Protein kinase domain profile. 466 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00539 779 MobiDBLite consensus disorder prediction 743 779 - -
Cma09g00539 779 Coils Coil 392 444 - -
Cma09g00539 779 Pfam Universal stress protein family 20 146 IPR006016 -
Cma09g00539 779 MobiDBLite consensus disorder prediction 737 779 - -
Cma09g00539 779 Coils Coil 325 352 - -
Cma09g00539 779 Pfam Protein kinase domain 467 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00539 779 Gene3D HUPs 19 154 IPR014729 -
Cma09g00539 779 SMART serkin_6 466 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00539 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01585 Cma09g00539 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00539 Cma-Chr9:2408437 Cma11g01405 Cma-Chr11:9232327 0 dispersed
Cma12g00651 Cma-Chr12:3436563 Cma09g00539 Cma-Chr9:2408437 0 dispersed
Cma15g01353 Cma-Chr15:8506181 Cma09g00539 Cma-Chr9:2408437 1.27E-136 dispersed
Cma01g01585 Cma-Chr1:10935651 Cma09g00539 Cma-Chr9:2408437 0 wgd
Cma12g00277 Cma-Chr12:1436928 Cma09g00539 Cma-Chr9:2408437 0 wgd
Cma05g00620 Cma-Chr5:3113792 Cma09g00539 Cma-Chr9:2408437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68793 PF00069 Pkinase 3.90E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00539 - - csv:105435028 1183.32