Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00540 ATGAAGAAAGAAAACGGCAACCGTGGATCGGGGGTTTCAGGTTCTCGTCGGACGCGGTCTCAGATAGCACCGGAATGGACCGCGGCGGAATGCCTTGTTCTTGTTAATGTGATTGGGGCTGTGGAGGCTGATTGTATGAAAGCTTTGTCTAGCTATCAGAAATGGAAGATTGTTGCCGAGGACTGCACAGCTTTGAATGTGGCTCGGACTTCGAATCAATGCAGGAAGAAGTGGGAGTGTTTGCTGATTGAACATGATGTTATCAGGCAATGGGAGTTAACGATGCCGGAGGATGATTCGTATTGGTGTTTGGAGAGTGGAAGGAGAAAAGAATTAGGACTTCCTGACAACTTTGACGAGGAGCTGTTCAAAGCAATTTATAATGTCTCATCAATGAGGGCGAACCAGTCGGATACAGAGCCCGATAACGATCCAGAGGCTGCCGTTGAGAACGCCGATGAAATTTCAGAGCCTGGCCCTAAAAGGCAAAGACGTGGTTCAATGTCTAAGAGAAATCAAGGCCTTGAGAAATCTTTAGAATGTAAAGAAGACGAAGAGGAGGAAGCAGAAGAACAACCTCTATTAAGCTCTCCAGAAGCAGACCTTCGCGATTGCTACATCAAAAACAACGGAGCAAAGGCGACCGACGACATTGAACCCGAAGAGCAAATGATGGTGAAGAAATTGCTTGAAAATGCAGAAAATGTTCAAGAAATTGTGTCTGAGAATGCAGAATGTGTAACTTCTGATGAAAAGAATGACAAGGACCAAACTAATTTGATAAGACGTCAGGGGAGCAAGCTTATCAGATGCCTAGGAGATTTTCTTAACACCATTAACGATCTCCGTGACCTGCTCGAAGACTTTGAACAAAATGTCAGGTTGGCCATTCGAGCAACGTTTAAATGCTGTCGACATTTTCCAGCGTGCTTTAACACTTCCTCTAGTACCAGTCCCGAGGCCGAAATCCTCATCAAGTTCAAGAGCTCTCTTTCGAACAACACCGCCTTAGACAATTGGGACACGTCGATCAACATCTGCAACGACGATCCCAAAACGAAAGGTAAATTCTGGACTGGTGTGACTTGCAAAGATGGAACTTTGTTTGGGTTACGGCTCGAGAATTTGAGCTTAGGTGGTGTTATCGACATAGACACGCTCGTGAACTTGCCATCTCTAAGGAGCATGAGCTTCATGAACAATAGCTTTCATGGTACAATGCCAAAGGTTAAGAAACTGGGCGCATTAAGAGCTTTGTATCTTGCATACAACAAGTTCTCTGGTACAATACCTGAAGACGCTTTTGAAAACATGAGGTCCTTGAAAACGGTGCGTTTAGAAGAGAATGAGTTTAAAGGACAAATTCCAGGTTCCCTTTCTAGTTTGCCAGCCTTGGTGGAATTGAGCCTTGAAGGGAATCGATTTGAAGGCAAAATCCCTGATTTTATTCCGAGGGATTGGAAGTTGTTCGATTTGTCCAATAACCTATTAGAGGGTCCAATACCTTCTGGCTTAGCCAAAATCGATTCCAATGCATTTGCAGGGAACAAAGATTTATGTGGACAGCCTCTGAGCCGATGTAAGTCTCCAAAGAAGTGGTACATCCTCACCGGAGTCACTGTCGGAATCGTCTTGGTAGCCGTCATTGTCTTGTACCACCGCTACCGCCGCCGGAGGGCTCTGTTATCGGCGGCAGAACAAGCCCAAAACTCAAAAGCCCACGATCAATTGGGCCTAGAAAAGGCCCAATATCAGGAGCCGACAGAAGAAAATACGAAGCTGCAGTTCGTGAGGGCCGATAAGCCCTTCTTTGACTTGGAGGAGCTGTTGAGAGCCCCGGCGGAAGTTCTGGGCGGCGGCAGCTTTGGGTCGTCATATAAGGCCCTACTTTCAAATGGGCCTCCAGTGGTTGTAAAGAGGCTTCGGCCCATGAGATGCGTTGGGTTCGAAGAGTTTCACGACCACATGAAAAGGTTGGGGATAATTTCACATCCCAATTTGCTTCCGCCTGTGGCCTTCTATTATAGAAATGAAGATAAGCTTTTGATTTCTGAGTTCATGGGGAATGGCAACTTGGCTGATCATCTTCATGGTCATGCTCAGCGTACGCCTGAAAATATTGGGCTAGACTGGCCCACACGGCTACGGATCATCAAAGGAGTGGGCCGGGGCCTGGCCCATTTACACAGCGAGTTGCCGAGCCTGAGCCTACCACACGGCCACTTAAAATCCTCCAACATTCTTCTCAACAGCAATTACGAGCCTCTATTAACCGACTTCGGCCTCGACCCTTTGGTGTGCCAGGATCAAGCACAGCAATACATGGCGGCGTACAAGTCTCCGGAGTTCAACCGGCACCGTCGGGTATCCCGAAAGACCGACGTGTGGAGTCTCGGAATCCTGATCCTCGAGCTTCTGACCGGGAAGTTCCCGGCGAACTATCTCCGGCACGGCGGAGGCGCAGCCAACGGCGACCTGGCGGCGTGGGTGAAGTTGGCTGTGCGGGAGGAGTGGACGGCGGAGGTTTTCGACGGCTACATGATGAAGGGGACGAAGAGCGAAGACGGGGAAATGGTGCGGCTGTTGCGGATCGGAATGATTTGCAGCGAAGAGGATGAGGATCGACGGTGGGGATTGAAGGAGGCGGTGGAGAAGATCGAGGAATTGAAGGAGACGGAAATTAATACCGACGATGAGTTCTATTCGTCTTATGGCAGTGAAGTGGAAGCGCGATCAGTCGAAAGGGAATGA 2751 48.64 MKKENGNRGSGVSGSRRTRSQIAPEWTAAECLVLVNVIGAVEADCMKALSSYQKWKIVAEDCTALNVARTSNQCRKKWECLLIEHDVIRQWELTMPEDDSYWCLESGRRKELGLPDNFDEELFKAIYNVSSMRANQSDTEPDNDPEAAVENADEISEPGPKRQRRGSMSKRNQGLEKSLECKEDEEEEAEEQPLLSSPEADLRDCYIKNNGAKATDDIEPEEQMMVKKLLENAENVQEIVSENAECVTSDEKNDKDQTNLIRRQGSKLIRCLGDFLNTINDLRDLLEDFEQNVRLAIRATFKCCRHFPACFNTSSSTSPEAEILIKFKSSLSNNTALDNWDTSINICNDDPKTKGKFWTGVTCKDGTLFGLRLENLSLGGVIDIDTLVNLPSLRSMSFMNNSFHGTMPKVKKLGALRALYLAYNKFSGTIPEDAFENMRSLKTVRLEENEFKGQIPGSLSSLPALVELSLEGNRFEGKIPDFIPRDWKLFDLSNNLLEGPIPSGLAKIDSNAFAGNKDLCGQPLSRCKSPKKWYILTGVTVGIVLVAVIVLYHRYRRRRALLSAAEQAQNSKAHDQLGLEKAQYQEPTEENTKLQFVRADKPFFDLEELLRAPAEVLGGGSFGSSYKALLSNGPPVVVKRLRPMRCVGFEEFHDHMKRLGIISHPNLLPPVAFYYRNEDKLLISEFMGNGNLADHLHGHAQRTPENIGLDWPTRLRIIKGVGRGLAHLHSELPSLSLPHGHLKSSNILLNSNYEPLLTDFGLDPLVCQDQAQQYMAAYKSPEFNRHRRVSRKTDVWSLGILILELLTGKFPANYLRHGGGAANGDLAAWVKLAVREEWTAEVFDGYMMKGTKSEDGEMVRLLRIGMICSEEDEDRRWGLKEAVEKIEELKETEINTDDEFYSSYGSEVEARSVERE 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2414500 2420338 - CmaCh09G005400.1 Cma09g00540 300545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00540 916 SUPERFAMILY Protein kinase-like (PK-like) 615 889 IPR011009 -
Cma09g00540 916 ProSiteProfiles Protein kinase domain profile. 611 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00540 916 Pfam Myb/SANT-like DNA-binding domain 24 92 IPR044822 -
Cma09g00540 916 Gene3D Phosphorylase Kinase; domain 1 578 686 - -
Cma09g00540 916 SUPERFAMILY L domain-like 320 508 - -
Cma09g00540 916 MobiDBLite consensus disorder prediction 133 202 - -
Cma09g00540 916 Coils Coil 172 192 - -
Cma09g00540 916 PANTHER LRR RECEPTOR-LIKE KINASE 315 897 - -
Cma09g00540 916 Pfam Leucine rich repeat N-terminal domain 319 363 IPR013210 -
Cma09g00540 916 Coils Coil 272 299 - -
Cma09g00540 916 Pfam Leucine rich repeat 416 475 IPR001611 GO:0005515
Cma09g00540 916 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 315 897 - -
Cma09g00540 916 MobiDBLite consensus disorder prediction 155 180 - -
Cma09g00540 916 Gene3D Ribonuclease Inhibitor 319 487 IPR032675 -
Cma09g00540 916 Gene3D Transferase(Phosphotransferase) domain 1 687 909 - -
Cma09g00540 916 Coils Coil 879 899 - -
Cma09g00540 916 Pfam Protein kinase domain 615 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00540 916 ProSiteProfiles Myb-like domain profile. 26 82 IPR001005 -
Cma09g00540 916 Gene3D - 26 84 - -
Cma09g00540 916 Gene3D Ribonuclease Inhibitor 490 527 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00540 - - - cmax:111476181 1222.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01586 Cma09g00540 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00024 Cma-Chr8:135070 Cma09g00540 Cma-Chr9:2414500 7.22E-09 dispersed
Cma09g00540 Cma-Chr9:2414500 Cma11g00327 Cma-Chr11:1639465 1.08E-177 dispersed
Cma17g01401 Cma-Chr17:9291935 Cma09g00540 Cma-Chr9:2414500 4.01E-10 dispersed
Cma01g01586 Cma-Chr1:10943665 Cma09g00540 Cma-Chr9:2414500 7.27E-145 wgd
Cma12g00275 Cma-Chr12:1428803 Cma09g00540 Cma-Chr9:2414500 0 wgd
Cma05g00617 Cma-Chr5:3101197 Cma09g00540 Cma-Chr9:2414500 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g242 . . . . . . . . . . Cma01g01586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01634 . Cma09g00540 . . . . Cpe02g00392 . . . . . . . . . . . . . . . . . Cme04g00318
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003929 0 2 0 0 0 1 2 1 2 1 1 1 2 2 2 2 1 1 3 1 2 2 1 2 2 2 2 2 4 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68794 PF00069 Pkinase 1.70E-25 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00540 Cma_Chr09 FPKM 2.962134 3.4027 0.271104 0.353394 6.909442 7.583747 6.214039 1.009134 1.066758 0.98135