Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00541 ATGAATGCCATGAAAAGTTTTCGGATCTTCGCGAGCTTTATAATCATGGTGTTTTGGGTGTTTGGGTATGGCTCACTGGTGTGGAATCCAGGATTTGAATTTGACGAGAAAATTGTAGGTTATATCAAGGATTATAAGCGCGTTTTCGACCTCGCATGCATTGATCACAGAGGTACGCCAGAAAATCCTGCTAGAACTCTCACGTTGGAACAGGAAGAAGCAGCAATTTGTTGGGGAGCAGCTTACTGTGTGCGGGGGACTCCTGAAAGGGAAAGAACTGCAATGGAGTATTTAGAACATAGAGAATGTGAATATGATCAAAAGACACTTGTTAACTTCTACAAGGAAGAGAGCTCTCTTGAGCCTGCCCTTTCAGGAGTAATTGTTTTCACATCGACTCTGGACAAAGAAGTGAACAAATACTACCTGGGTCCAGCTCCGTTAAACGACATGGCTAGACAAATTGCTACTGCTGCTGGGCCTTGTGGAAACAATAAGGATTATATTTTCATGTTAGAGAAGGCATTGTTTAACATAGGTCACGAGGATGAAATGGTGATCGAGCTCGCTAACGAGGTGAGAAAAGTTCTCGATCTCCTCGAGAATGGTATCTCAAGGGAGAACAAACTGCTCGGAGCAGTGCCCCACGTAGTACTCAAGTCGCACATATCGTCCTTAGAACTACAACTACTTCCAGAAGCCATAGCCACAGATTCCTAA 720 43.89 MNAMKSFRIFASFIIMVFWVFGYGSLVWNPGFEFDEKIVGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEEAAICWGAAYCVRGTPERERTAMEYLEHRECEYDQKTLVNFYKEESSLEPALSGVIVFTSTLDKEVNKYYLGPAPLNDMARQIATAAGPCGNNKDYIFMLEKALFNIGHEDEMVIELANEVRKVLDLLENGISRENKLLGAVPHVVLKSHISSLELQLLPEAIATDS 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2421162 2425049 + CmaCh09G005410.1 Cma09g00541 300546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00541 239 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 16 239 IPR006840 GO:0003839|GO:0006751
Cma09g00541 239 Gene3D - 16 195 - -
Cma09g00541 239 CDD GGCT_like 20 124 IPR013024 -
Cma09g00541 239 Pfam ChaC-like protein 19 195 IPR006840 GO:0003839|GO:0006751
Cma09g00541 239 PANTHER GAMMA-GLUTAMYLCYCLOTRANSFERASE 2-2 16 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00541 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101209842 439.113
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01587 Cma09g00541 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01587 Cma-Chr1:10950028 Cma09g00541 Cma-Chr9:2421162 2.92E-117 wgd
Cma12g00273 Cma-Chr12:1417007 Cma09g00541 Cma-Chr9:2421162 8.25E-100 wgd
Cma05g00616 Cma-Chr5:3091084 Cma09g00541 Cma-Chr9:2421162 2.85E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g241 . . . . . . . . . . Cma01g01587 . . Car12g00258 Sed03g1518 Cpe07g00236 . Bhi04g01114 Tan02g2598 . . . . Lcy13g1366 . . . . . . . . . . Cone20ag0622 . . . Cme03g01710 . . . . . . . . . Cmo01g01635 . Cma09g00541 . . . . Cpe02g00391 . . . . . . . Cla08g01252 . . . . . Cre08g1191 Lsi08g01114 Csa02g02305 . Cme04g00317
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002891 1 3 1 2 0 1 4 1 1 2 2 1 2 2 2 2 1 3 3 2 2 2 1 1 2 0 2 3 4 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00541 Cma_Chr09 FPKM 3.943961 2.36547 0.391017 0.0 8.389379 10.644168 11.707409 0.31047 0.221982 0.279362