Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00542 ATGGATTCGGCGTCTCTAGCTACTCTCGCGCCTGCTCTGCCGCAGCAGAATCTTCACAGAGTCTTCGTCTACGGTACTCTCATGGCTGATGAAGTCCTTCGTATCCTCTTGAAGCGTGATTCTCAGTCCTCTGCTGCCGTCCTCAATGGCTATCAAAGATTAAGCATTAAAGGACGAGTTTATCCAGCGATCATACCTGTTAATAGCAAGAAAGTATCTGGCAAGATTCTTTCAGGCATCACAGCCTCCGAAATGGATATTTTAGACGCATATGAGGATGTTGAATACAAGAGGAGCACAGTTGAGGTCTCTTTAATGGACAGTTTTGAGAAGCTTGTAGTTTATGCTTATGTTTGGTGCAACGAAAAGGATCCTGACTTGTACGGACATTGGGATTTTGAGGAGTGGAAGCGAGAGCATCTGGATGCTTACGTCGAGATGGTCAATGACTTTATAGAATAA 462 44.59 MDSASLATLAPALPQQNLHRVFVYGTLMADEVLRILLKRDSQSSAAVLNGYQRLSIKGRVYPAIIPVNSKKVSGKILSGITASEMDILDAYEDVEYKRSTVEVSLMDSFEKLVVYAYVWCNEKDPDLYGHWDFEEWKREHLDAYVEMVNDFIE 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2426196 2430526 + CmaCh09G005420.1 Cma09g00542 300547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00542 153 Gene3D - 126 153 - -
Cma09g00542 153 PANTHER AIG2-LIKE PROTEIN D 11 152 IPR045038 -
Cma09g00542 153 CDD GGCT_like 21 119 IPR013024 -
Cma09g00542 153 Gene3D - 8 125 - -
Cma09g00542 153 Pfam Gamma-glutamyl cyclotransferase, AIG2-like 21 132 IPR009288 -
Cma09g00542 153 PANTHER AVRRPT2-INDUCED PROTEIN 2-LIKE 11 152 - -
Cma09g00542 153 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 18 136 IPR036568 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00542 - - - csv:101216942 239.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01588 Cma09g00542 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01588 Cma-Chr1:10954404 Cma09g00542 Cma-Chr9:2426196 2.53E-85 wgd
Cma05g00615 Cma-Chr5:3083271 Cma09g00542 Cma-Chr9:2426196 1.32E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g239 . . . . . . . . . . Cma01g01588 . . . . . . Bhi04g01117 . . . Hepe10g0331 . Lcy13g1370 . . . . . . . . . . Cone20ag0620 . . . Cme03g01714 . . . . . . . Bma02g00085 . Cmo01g01636 . Cma09g00542 . . . . Cpe02g00390 . . . . . . . Cla08g01250 Cam08g1708 Cec08g1288 Cco08g1409 Clacu08g1405 . Cre08g1189 Lsi08g01113 Csa02g02303 . Cme04g00316
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000996 1 12 1 1 1 2 2 2 2 4 2 2 3 4 3 3 2 2 3 2 3 2 2 2 2 2 2 5 4 1 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00542 Cma_Chr09 FPKM 1.913001 2.342043 14.070931 14.539046 4.139982 4.378333 5.512502 25.430387 29.580694 30.646738