Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00543 ATGGATCCAAATTCGAAGAAGTCGAACAAAATCAGAGACATCGTAAGGCTTCACCAGATCCTGAAGAAATGGCGGAAGTTAGCGGACTCATCGAAAACGGCGAACAAAGTCTCCGGCACGGCGGCGGGATCGGGAGGCAAGAGCATAAAGTTTCTGAAACGAACGCTTTCGGCCGGCGGAGAAATCTCCGGCGGCGCCGTGCCGAAAGGCTATTTGGCGGTGAGCGTAGGAGAGGAGCAAAAGCGATTTGTTATACCGACGCAGTATTTAGGGCATCCGGCGTTCGAGATTCTGTTGAGAGAGGCGGAGGAGGAGTTCGGGTTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAGAAGAAGAACGGGGATTTGTTAGTCGGAGAGGAGGTGTTGAGTTTCTGTTCCTTGGAAACGCTGCACATTACGACGTCGCACCATCTGAAGCAGAAGCAAGTGGAGATGAACTTCAAGTCACTAACGATCTTCATCCTCCTCTCTTTCTCCACCGCCGTGTGCTCTCTGCTGAAAGCAACCGCCGCCGCGTGCGACGCCGAATCCCTGCCGGACCGACGGAATCTACGATCGGATCAAATCACGGTCCTCATCAACGGCTATTACGAATCCCGCATCCCTCTACTCCAATCAATAGCCGCCACGTATGCCGCATCCCCAATCGTACACGCCGTACTGATCCTTTGGGGAAATCCCTCAACCTCGTCTAAAACCCTAACGCAATTGGCTCAAAACCTCACCACTGGACCCATTTCCGTAATCCGCCAATCTTCAAACAGCCTCAATTCTCGTTTCCTACCCCATAAGTCCATCCAAACCGGCGCCGTTTTGATCTGCGACGACGACGTCGAGATCGATATATCGTCCCTGGAGTTCGCGTTCAGAGTTTGGGGGAGAAACCCCGAACGACTTGTCGGCTTCTTCGTCCGGTCCCACGATCTAGACCTCTCGAGGCGAGAATGGATCTACACCGTTCATCAAGACAAATACTCGATCGTGCTCACGAAGCTGATGATTCTGAAGATGGAGTATTTGTTCGAGTATACTTGCGGTGGCGGAGCGGCAATGGCCGACATGAGAAGAGTTGTCGATCGGGAGCGCAATTGCGAGGATATCTTGATGAATTTCATGGTGGCCGACATGTCGAACGCTGGGCCTATTCTGGTTGCGGCGCAGAGGATCAGAGACTGGGGGGACCCACGCAATGATTACGATGAGAATGAACGGCTGGGATTGGGGGAGAGGTTTAGTGAGGTGGGGCTGAGTAATAGGAAAGGGGAGCATAGGAAGAGAAGGGGACGGTGTATTACGGAGTTTCATAGACGGCTGGGGAGGATGCCGTTACGGTATAGTTACGGGAAGTTAGTTAATTCAGTTGGCGAGCAGGCTTTGTGTAGAAAAGGAGGGAAGTTGGTCCCTTGCGATCATAACCCGGAGATGGAGGCGGATTTGGCGTCGGGGAATCGTTTGGTCTTCGCTTACTACATCACCGGCCATGGCTTCGGCCACGCCACTCGCGTTATTGAGTCTTCTTCTGTTTTGATTGAATGCGTTCGTCTATGCTATGGAGTTTGGATTTCGTTCTGTTATGAGCTCGAATTGGCCTCTCAGTTCTCGAGTCAAATTTCTTTAGCTTTCAAATGTCGAGAGATTTCTACATGCTTGATCGCATTTACACTTCTCTCGTCTGGAATGTCGTTAGTTATAAAGCGTTCTTCCAGTAATGTCGCTCGGCACCTGATACTTGCTGGCCACGAGGTACATGTGGTCTCCGCTGCCCCTGAGTTTGTTTTTACTTCTGCAATCCAGTCCCCTAGGCTATTCATTCGGAAGGTATTGTTGGACTGTGGGGCTGTCCAGGCTGATGCACTGACAGTCGATCGCCTAGCATCCTTAAAGAAGTATCACGAGACAGCTGTTGTGCCCCGGTGTACTATTTTGGAAACAGAAGTAAAGTGGCTGAAGTCAATCAAAGCTGATTTAGTGAATTTTGATAATTTTGCTTCTATGAAATGTAAACAGGTTTCGGATGTTGTACCAGTTGCTTGCCGTGCTGCTGCTGATGCTGGGATTCGCTCTGTTTGTGTTACCAACTTCAGTTGGGATTTCATCTATGCAGAGTATGTAATGGATGCTGGGCATCACCACCGTTCGATTGTCTGGCAGATTGCAGCGGATTATTCACATTGCGAGTTCCTGATCCGCCTCCCAGGATACTGTCCAATGCCTGCTTTCCGCGATGTTGTTGATGTACCTCTTGTTGTGAGAAGGTTGCACAAAACACGGCAGGAGGCGAGGAACGAACTGGGTATTGGAGATGATGTCAAATTACTCATCCTTAATTTTGGCGGACAGCCTGCCGGCTGGAAGTTGAAAGAGGAATATCTACCTCCTGGTTGGCTTTGCCTGGTGTGTGGTGCTTCAGACACTGAAGAGGTTCCACCAAATTTCATTAAGCTCGCCAAAGATACGTATACACCAGATATGATAGCGGCTTCTGATTGCATGCTCGGAAAAATTGGTTACGGAACTGTTAGTGAAGCGTTGGCATTCGGAGTACCCTTTGTCTTCGTAAGAAGAGATTATTTTAATGAAGAGCCATTTTTAAGGAGTATGCTTGAGTATTATCAAGGTGGGGTTGAGATGATAAGGAGGGATTTACTCACTGGTCAATGGAAGCCTTATCTTGAGCGTGCTATTAGTTTGAAACCTTGCTATGAGGGAGGTGTCAATGGTGGTGAGGTTGCAGCCCATATTTTGCAAGAGACAGCTAGCGGGAAAAATTATTCATCTGACAAGTTTAGTGGGGCAAGAAGATTGCAAGATGCCATAGTCCTAGGATATGAACTCCAAAGGATTCGTGGTCGAGATCTCTACATTCCAGAATGGTATGCGAATGCTGAAAATGAATTTGGCCTTTCGAAAGCACCACCTACTTCCCGAGTGGATGAGAGAAGCTCACCAATAGACTATTCTATACAGGATTTTGAGGTGCTTCATGGTGACGTTCAAGGTTTTCCCGACACAGTGAGCTTCTTAAAAAGCTTGGTCGAATTAAGTGCATTGAATGACAGTGGAAACACTGAGAAACGGCGGGAACAGAAGGCTGCTGCTGGACTCTTTAATTGGGAGGAAGACATTTTTGTAACAAGAGCACCTGGAAGGTTGGATGTCATGGGAGGCATTGCTGATTACTCTGGAAGCCTCGTCTTGCAGATGCCTATAAGAGAAGCCTGTCATGTTGCAGTGCAGAGAAACCATCCTAGTAAACATAGGCTTTGGAAGCACGCACAAGCTCGACAGAATTCCAGTGTACAAGGCCAAACACCAGTTCTTCAAATAGTATCTTACGGGTCTGAGTTGAGCAACCGTGCCCCAACCTTTGATATGAATCTATCTGATTTCATGGACGGAGAGAAGCCAATTTCGTATGAGAATGCAAGAAAATTCTTCGGTAAAGATCCAGCACAGAAGTGGGCAGCATATGTTGCAGGTACAATCTTGGTTTTAATGAGAGAGTTGGGCGTACGATTTGAAGACAGTATCAGTGTGCTGGTTTCCTCAGCGGTGCCAGAAGGTAAAGGTGTATCTTCATCTGCCTCCGTGGAAGTGGCCTCGTTATCTGCTATAGCTGCAGCTCACGGATTGAGTGTCGGTTCAAGAGATGTAGCTCTACTTTGCCAAAAGGTGGAGAATTGCATTGTGGGAGCTCCATGTGGTGTTATGGACCAGATGACGTCAGCATGCGGAGAAGCCAACAAACTACTAGCAATGGTGTGCCAGCCTGCTGAGGTACTTGGACTTGTTGAGATACCAAGCCATATTCGATTTTGGGGCCTTGATTCAGGAATACGCCACAGAGAGATCATCAAGTCTACCGCATCTTCTATGTTACCAGTGCCATCTTCCGTCGCTAATGGTGTAAATAATTATGATTCTGAGGATAATGGTGTCGAATTGCTTCAATCCGAGTCTTCGTTGGACTACTTGTGCAACCTTCCGCCTCACAGGTAA 4068 48.25 MDPNSKKSNKIRDIVRLHQILKKWRKLADSSKTANKVSGTAAGSGGKSIKFLKRTLSAGGEISGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKNGDLLVGEEVLSFCSLETLHITTSHHLKQKQVEMNFKSLTIFILLSFSTAVCSLLKATAAACDAESLPDRRNLRSDQITVLINGYYESRIPLLQSIAATYAASPIVHAVLILWGNPSTSSKTLTQLAQNLTTGPISVIRQSSNSLNSRFLPHKSIQTGAVLICDDDVEIDISSLEFAFRVWGRNPERLVGFFVRSHDLDLSRREWIYTVHQDKYSIVLTKLMILKMEYLFEYTCGGGAAMADMRRVVDRERNCEDILMNFMVADMSNAGPILVAAQRIRDWGDPRNDYDENERLGLGERFSEVGLSNRKGEHRKRRGRCITEFHRRLGRMPLRYSYGKLVNSVGEQALCRKGGKLVPCDHNPEMEADLASGNRLVFAYYITGHGFGHATRVIESSSVLIECVRLCYGVWISFCYELELASQFSSQISLAFKCREISTCLIAFTLLSSGMSLVIKRSSSNVARHLILAGHEVHVVSAAPEFVFTSAIQSPRLFIRKVLLDCGAVQADALTVDRLASLKKYHETAVVPRCTILETEVKWLKSIKADLVNFDNFASMKCKQVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMDAGHHHRSIVWQIAADYSHCEFLIRLPGYCPMPAFRDVVDVPLVVRRLHKTRQEARNELGIGDDVKLLILNFGGQPAGWKLKEEYLPPGWLCLVCGASDTEEVPPNFIKLAKDTYTPDMIAASDCMLGKIGYGTVSEALAFGVPFVFVRRDYFNEEPFLRSMLEYYQGGVEMIRRDLLTGQWKPYLERAISLKPCYEGGVNGGEVAAHILQETASGKNYSSDKFSGARRLQDAIVLGYELQRIRGRDLYIPEWYANAENEFGLSKAPPTSRVDERSSPIDYSIQDFEVLHGDVQGFPDTVSFLKSLVELSALNDSGNTEKRREQKAAAGLFNWEEDIFVTRAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNHPSKHRLWKHAQARQNSSVQGQTPVLQIVSYGSELSNRAPTFDMNLSDFMDGEKPISYENARKFFGKDPAQKWAAYVAGTILVLMRELGVRFEDSISVLVSSAVPEGKGVSSSASVEVASLSAIAAAHGLSVGSRDVALLCQKVENCIVGAPCGVMDQMTSACGEANKLLAMVCQPAEVLGLVEIPSHIRFWGLDSGIRHREIIKSTASSMLPVPSSVANGVNNYDSEDNGVELLQSESSLDYLCNLPPHR 1355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2431918 2445512 - CmaCh09G005430.1 Cma09g00543 300548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00543 1355 Pfam Glycosyl transferase family 64 domain 212 475 IPR015338 GO:0016021|GO:0016757
Cma09g00543 1355 PANTHER MEVALONATE KINASE/GALACTOKINASE 579 1355 - -
Cma09g00543 1355 Gene3D - 1052 1296 IPR014721 -
Cma09g00543 1355 PANTHER L-ARABINOKINASE 508 535 - -
Cma09g00543 1355 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 208 481 IPR029044 -
Cma09g00543 1355 PANTHER L-ARABINOKINASE 579 1355 - -
Cma09g00543 1355 PANTHER MEVALONATE KINASE/GALACTOKINASE 508 535 - -
Cma09g00543 1355 Pfam Auxin responsive protein 30 129 IPR003676 GO:0009733
Cma09g00543 1355 Pfam GHMP kinases N terminal domain 1202 1268 IPR006204 GO:0005524
Cma09g00543 1355 PRINTS Mevalonate kinase family signature 1249 1268 - -
Cma09g00543 1355 PRINTS Mevalonate kinase family signature 1206 1228 - -
Cma09g00543 1355 PRINTS Mevalonate kinase family signature 1070 1094 - -
Cma09g00543 1355 SUPERFAMILY Ribosomal protein S5 domain 2-like 1064 1283 IPR020568 -
Cma09g00543 1355 Gene3D Glycogen Phosphorylase B; 776 919 - -
Cma09g00543 1355 Pfam Galactokinase galactose-binding signature 1062 1103 IPR019539 -
Cma09g00543 1355 SUPERFAMILY Nucleotide-diphospho-sugar transferases 212 472 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01405 Cma-Chr4:7188368 Cma09g00543 Cma-Chr9:2431918 5.47E-18 dispersed
Cma09g00543 Cma-Chr9:2431918 Cma19g00707 Cma-Chr19:7228844 6.78E-21 dispersed
Cma17g00512 Cma-Chr17:3445016 Cma09g00543 Cma-Chr9:2431918 1.41E-17 dispersed
Cma18g00927 Cma-Chr18:7947046 Cma09g00543 Cma-Chr9:2431918 2.54E-20 dispersed
Cma19g01098 Cma-Chr19:9105750 Cma09g00543 Cma-Chr9:2431918 1.19E-17 dispersed
Cma20g00276 Cma-Chr20:1346213 Cma09g00543 Cma-Chr9:2431918 8.74E-18 dispersed
Cma04g01126 Cma-Chr4:5818710 Cma09g00543 Cma-Chr9:2431918 5.24E-26 transposed
Cma16g00725 Cma-Chr16:3809879 Cma09g00543 Cma-Chr9:2431918 4.64E-07 transposed
Cma17g00621 Cma-Chr17:5294709 Cma09g00543 Cma-Chr9:2431918 8.60E-39 transposed
Cma01g01589 Cma-Chr1:10971844 Cma09g00543 Cma-Chr9:2431918 3.90E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00543 K12446 - csv:101209596 1343.95