Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00543 | ATGGATCCAAATTCGAAGAAGTCGAACAAAATCAGAGACATCGTAAGGCTTCACCAGATCCTGAAGAAATGGCGGAAGTTAGCGGACTCATCGAAAACGGCGAACAAAGTCTCCGGCACGGCGGCGGGATCGGGAGGCAAGAGCATAAAGTTTCTGAAACGAACGCTTTCGGCCGGCGGAGAAATCTCCGGCGGCGCCGTGCCGAAAGGCTATTTGGCGGTGAGCGTAGGAGAGGAGCAAAAGCGATTTGTTATACCGACGCAGTATTTAGGGCATCCGGCGTTCGAGATTCTGTTGAGAGAGGCGGAGGAGGAGTTCGGGTTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAGAAGAAGAACGGGGATTTGTTAGTCGGAGAGGAGGTGTTGAGTTTCTGTTCCTTGGAAACGCTGCACATTACGACGTCGCACCATCTGAAGCAGAAGCAAGTGGAGATGAACTTCAAGTCACTAACGATCTTCATCCTCCTCTCTTTCTCCACCGCCGTGTGCTCTCTGCTGAAAGCAACCGCCGCCGCGTGCGACGCCGAATCCCTGCCGGACCGACGGAATCTACGATCGGATCAAATCACGGTCCTCATCAACGGCTATTACGAATCCCGCATCCCTCTACTCCAATCAATAGCCGCCACGTATGCCGCATCCCCAATCGTACACGCCGTACTGATCCTTTGGGGAAATCCCTCAACCTCGTCTAAAACCCTAACGCAATTGGCTCAAAACCTCACCACTGGACCCATTTCCGTAATCCGCCAATCTTCAAACAGCCTCAATTCTCGTTTCCTACCCCATAAGTCCATCCAAACCGGCGCCGTTTTGATCTGCGACGACGACGTCGAGATCGATATATCGTCCCTGGAGTTCGCGTTCAGAGTTTGGGGGAGAAACCCCGAACGACTTGTCGGCTTCTTCGTCCGGTCCCACGATCTAGACCTCTCGAGGCGAGAATGGATCTACACCGTTCATCAAGACAAATACTCGATCGTGCTCACGAAGCTGATGATTCTGAAGATGGAGTATTTGTTCGAGTATACTTGCGGTGGCGGAGCGGCAATGGCCGACATGAGAAGAGTTGTCGATCGGGAGCGCAATTGCGAGGATATCTTGATGAATTTCATGGTGGCCGACATGTCGAACGCTGGGCCTATTCTGGTTGCGGCGCAGAGGATCAGAGACTGGGGGGACCCACGCAATGATTACGATGAGAATGAACGGCTGGGATTGGGGGAGAGGTTTAGTGAGGTGGGGCTGAGTAATAGGAAAGGGGAGCATAGGAAGAGAAGGGGACGGTGTATTACGGAGTTTCATAGACGGCTGGGGAGGATGCCGTTACGGTATAGTTACGGGAAGTTAGTTAATTCAGTTGGCGAGCAGGCTTTGTGTAGAAAAGGAGGGAAGTTGGTCCCTTGCGATCATAACCCGGAGATGGAGGCGGATTTGGCGTCGGGGAATCGTTTGGTCTTCGCTTACTACATCACCGGCCATGGCTTCGGCCACGCCACTCGCGTTATTGAGTCTTCTTCTGTTTTGATTGAATGCGTTCGTCTATGCTATGGAGTTTGGATTTCGTTCTGTTATGAGCTCGAATTGGCCTCTCAGTTCTCGAGTCAAATTTCTTTAGCTTTCAAATGTCGAGAGATTTCTACATGCTTGATCGCATTTACACTTCTCTCGTCTGGAATGTCGTTAGTTATAAAGCGTTCTTCCAGTAATGTCGCTCGGCACCTGATACTTGCTGGCCACGAGGTACATGTGGTCTCCGCTGCCCCTGAGTTTGTTTTTACTTCTGCAATCCAGTCCCCTAGGCTATTCATTCGGAAGGTATTGTTGGACTGTGGGGCTGTCCAGGCTGATGCACTGACAGTCGATCGCCTAGCATCCTTAAAGAAGTATCACGAGACAGCTGTTGTGCCCCGGTGTACTATTTTGGAAACAGAAGTAAAGTGGCTGAAGTCAATCAAAGCTGATTTAGTGAATTTTGATAATTTTGCTTCTATGAAATGTAAACAGGTTTCGGATGTTGTACCAGTTGCTTGCCGTGCTGCTGCTGATGCTGGGATTCGCTCTGTTTGTGTTACCAACTTCAGTTGGGATTTCATCTATGCAGAGTATGTAATGGATGCTGGGCATCACCACCGTTCGATTGTCTGGCAGATTGCAGCGGATTATTCACATTGCGAGTTCCTGATCCGCCTCCCAGGATACTGTCCAATGCCTGCTTTCCGCGATGTTGTTGATGTACCTCTTGTTGTGAGAAGGTTGCACAAAACACGGCAGGAGGCGAGGAACGAACTGGGTATTGGAGATGATGTCAAATTACTCATCCTTAATTTTGGCGGACAGCCTGCCGGCTGGAAGTTGAAAGAGGAATATCTACCTCCTGGTTGGCTTTGCCTGGTGTGTGGTGCTTCAGACACTGAAGAGGTTCCACCAAATTTCATTAAGCTCGCCAAAGATACGTATACACCAGATATGATAGCGGCTTCTGATTGCATGCTCGGAAAAATTGGTTACGGAACTGTTAGTGAAGCGTTGGCATTCGGAGTACCCTTTGTCTTCGTAAGAAGAGATTATTTTAATGAAGAGCCATTTTTAAGGAGTATGCTTGAGTATTATCAAGGTGGGGTTGAGATGATAAGGAGGGATTTACTCACTGGTCAATGGAAGCCTTATCTTGAGCGTGCTATTAGTTTGAAACCTTGCTATGAGGGAGGTGTCAATGGTGGTGAGGTTGCAGCCCATATTTTGCAAGAGACAGCTAGCGGGAAAAATTATTCATCTGACAAGTTTAGTGGGGCAAGAAGATTGCAAGATGCCATAGTCCTAGGATATGAACTCCAAAGGATTCGTGGTCGAGATCTCTACATTCCAGAATGGTATGCGAATGCTGAAAATGAATTTGGCCTTTCGAAAGCACCACCTACTTCCCGAGTGGATGAGAGAAGCTCACCAATAGACTATTCTATACAGGATTTTGAGGTGCTTCATGGTGACGTTCAAGGTTTTCCCGACACAGTGAGCTTCTTAAAAAGCTTGGTCGAATTAAGTGCATTGAATGACAGTGGAAACACTGAGAAACGGCGGGAACAGAAGGCTGCTGCTGGACTCTTTAATTGGGAGGAAGACATTTTTGTAACAAGAGCACCTGGAAGGTTGGATGTCATGGGAGGCATTGCTGATTACTCTGGAAGCCTCGTCTTGCAGATGCCTATAAGAGAAGCCTGTCATGTTGCAGTGCAGAGAAACCATCCTAGTAAACATAGGCTTTGGAAGCACGCACAAGCTCGACAGAATTCCAGTGTACAAGGCCAAACACCAGTTCTTCAAATAGTATCTTACGGGTCTGAGTTGAGCAACCGTGCCCCAACCTTTGATATGAATCTATCTGATTTCATGGACGGAGAGAAGCCAATTTCGTATGAGAATGCAAGAAAATTCTTCGGTAAAGATCCAGCACAGAAGTGGGCAGCATATGTTGCAGGTACAATCTTGGTTTTAATGAGAGAGTTGGGCGTACGATTTGAAGACAGTATCAGTGTGCTGGTTTCCTCAGCGGTGCCAGAAGGTAAAGGTGTATCTTCATCTGCCTCCGTGGAAGTGGCCTCGTTATCTGCTATAGCTGCAGCTCACGGATTGAGTGTCGGTTCAAGAGATGTAGCTCTACTTTGCCAAAAGGTGGAGAATTGCATTGTGGGAGCTCCATGTGGTGTTATGGACCAGATGACGTCAGCATGCGGAGAAGCCAACAAACTACTAGCAATGGTGTGCCAGCCTGCTGAGGTACTTGGACTTGTTGAGATACCAAGCCATATTCGATTTTGGGGCCTTGATTCAGGAATACGCCACAGAGAGATCATCAAGTCTACCGCATCTTCTATGTTACCAGTGCCATCTTCCGTCGCTAATGGTGTAAATAATTATGATTCTGAGGATAATGGTGTCGAATTGCTTCAATCCGAGTCTTCGTTGGACTACTTGTGCAACCTTCCGCCTCACAGGTAA | 4068 | 48.25 | MDPNSKKSNKIRDIVRLHQILKKWRKLADSSKTANKVSGTAAGSGGKSIKFLKRTLSAGGEISGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKNGDLLVGEEVLSFCSLETLHITTSHHLKQKQVEMNFKSLTIFILLSFSTAVCSLLKATAAACDAESLPDRRNLRSDQITVLINGYYESRIPLLQSIAATYAASPIVHAVLILWGNPSTSSKTLTQLAQNLTTGPISVIRQSSNSLNSRFLPHKSIQTGAVLICDDDVEIDISSLEFAFRVWGRNPERLVGFFVRSHDLDLSRREWIYTVHQDKYSIVLTKLMILKMEYLFEYTCGGGAAMADMRRVVDRERNCEDILMNFMVADMSNAGPILVAAQRIRDWGDPRNDYDENERLGLGERFSEVGLSNRKGEHRKRRGRCITEFHRRLGRMPLRYSYGKLVNSVGEQALCRKGGKLVPCDHNPEMEADLASGNRLVFAYYITGHGFGHATRVIESSSVLIECVRLCYGVWISFCYELELASQFSSQISLAFKCREISTCLIAFTLLSSGMSLVIKRSSSNVARHLILAGHEVHVVSAAPEFVFTSAIQSPRLFIRKVLLDCGAVQADALTVDRLASLKKYHETAVVPRCTILETEVKWLKSIKADLVNFDNFASMKCKQVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMDAGHHHRSIVWQIAADYSHCEFLIRLPGYCPMPAFRDVVDVPLVVRRLHKTRQEARNELGIGDDVKLLILNFGGQPAGWKLKEEYLPPGWLCLVCGASDTEEVPPNFIKLAKDTYTPDMIAASDCMLGKIGYGTVSEALAFGVPFVFVRRDYFNEEPFLRSMLEYYQGGVEMIRRDLLTGQWKPYLERAISLKPCYEGGVNGGEVAAHILQETASGKNYSSDKFSGARRLQDAIVLGYELQRIRGRDLYIPEWYANAENEFGLSKAPPTSRVDERSSPIDYSIQDFEVLHGDVQGFPDTVSFLKSLVELSALNDSGNTEKRREQKAAAGLFNWEEDIFVTRAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNHPSKHRLWKHAQARQNSSVQGQTPVLQIVSYGSELSNRAPTFDMNLSDFMDGEKPISYENARKFFGKDPAQKWAAYVAGTILVLMRELGVRFEDSISVLVSSAVPEGKGVSSSASVEVASLSAIAAAHGLSVGSRDVALLCQKVENCIVGAPCGVMDQMTSACGEANKLLAMVCQPAEVLGLVEIPSHIRFWGLDSGIRHREIIKSTASSMLPVPSSVANGVNNYDSEDNGVELLQSESSLDYLCNLPPHR | 1355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2431918 | 2445512 | - | CmaCh09G005430.1 | Cma09g00543 | 300548 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00543 | 1355 | Pfam | Glycosyl transferase family 64 domain | 212 | 475 | IPR015338 | GO:0016021|GO:0016757 | |
Cma09g00543 | 1355 | PANTHER | MEVALONATE KINASE/GALACTOKINASE | 579 | 1355 | - | - | |
Cma09g00543 | 1355 | Gene3D | - | 1052 | 1296 | IPR014721 | - | |
Cma09g00543 | 1355 | PANTHER | L-ARABINOKINASE | 508 | 535 | - | - | |
Cma09g00543 | 1355 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 208 | 481 | IPR029044 | - | |
Cma09g00543 | 1355 | PANTHER | L-ARABINOKINASE | 579 | 1355 | - | - | |
Cma09g00543 | 1355 | PANTHER | MEVALONATE KINASE/GALACTOKINASE | 508 | 535 | - | - | |
Cma09g00543 | 1355 | Pfam | Auxin responsive protein | 30 | 129 | IPR003676 | GO:0009733 | |
Cma09g00543 | 1355 | Pfam | GHMP kinases N terminal domain | 1202 | 1268 | IPR006204 | GO:0005524 | |
Cma09g00543 | 1355 | PRINTS | Mevalonate kinase family signature | 1249 | 1268 | - | - | |
Cma09g00543 | 1355 | PRINTS | Mevalonate kinase family signature | 1206 | 1228 | - | - | |
Cma09g00543 | 1355 | PRINTS | Mevalonate kinase family signature | 1070 | 1094 | - | - | |
Cma09g00543 | 1355 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 1064 | 1283 | IPR020568 | - | |
Cma09g00543 | 1355 | Gene3D | Glycogen Phosphorylase B; | 776 | 919 | - | - | |
Cma09g00543 | 1355 | Pfam | Galactokinase galactose-binding signature | 1062 | 1103 | IPR019539 | - | |
Cma09g00543 | 1355 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 212 | 472 | IPR029044 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01405 | Cma-Chr4:7188368 | Cma09g00543 | Cma-Chr9:2431918 | 5.47E-18 | dispersed | |
Cma09g00543 | Cma-Chr9:2431918 | Cma19g00707 | Cma-Chr19:7228844 | 6.78E-21 | dispersed | |
Cma17g00512 | Cma-Chr17:3445016 | Cma09g00543 | Cma-Chr9:2431918 | 1.41E-17 | dispersed | |
Cma18g00927 | Cma-Chr18:7947046 | Cma09g00543 | Cma-Chr9:2431918 | 2.54E-20 | dispersed | |
Cma19g01098 | Cma-Chr19:9105750 | Cma09g00543 | Cma-Chr9:2431918 | 1.19E-17 | dispersed | |
Cma20g00276 | Cma-Chr20:1346213 | Cma09g00543 | Cma-Chr9:2431918 | 8.74E-18 | dispersed | |
Cma04g01126 | Cma-Chr4:5818710 | Cma09g00543 | Cma-Chr9:2431918 | 5.24E-26 | transposed | |
Cma16g00725 | Cma-Chr16:3809879 | Cma09g00543 | Cma-Chr9:2431918 | 4.64E-07 | transposed | |
Cma17g00621 | Cma-Chr17:5294709 | Cma09g00543 | Cma-Chr9:2431918 | 8.60E-39 | transposed | |
Cma01g01589 | Cma-Chr1:10971844 | Cma09g00543 | Cma-Chr9:2431918 | 3.90E-81 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00543 | K12446 | - | csv:101209596 | 1343.95 |