Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00545 ATGAACAGACTCTTCGAATTCCGAGTCATTCCTCAGATGGCATGGGGCAACATATACAGAAGAAGAATGAAAGTGTTCGGCCTGGCTTTAGTGATATACCTCGATTATAAGGCATTAGAACAAAGAGAGAAGTGGATTAGCAAGTCTAAAAGAGCAGCCTTATGGGAAAGAGCACATGAACGTAATGCAAAACGGGCATTGAGTTTGATAATAGAGTTGGAAGGCTTGTGGGTGAAATTTGGACAGTATTTATCTACTCGAGCAGATGTTATCCCCGATGCATACATACGCCTTTTCAAACAGCTACAAGACTCTCTCCCTCCTCGTCCTTTACAAGAGGTTCGCCAGACCATACAGAAAGAGTTGGGGAAATCAATCACTTATATGTTTGCAAACTTTGTGGAAGCTCCCTTAGCAACTGCGTCTATAGCGCAAGTGCACCGAGCGACTTTGCTTGATGGAAGGGAGGTGGTTATCAAAGTGCAACACGAGGGCATTAAGACCGTTATATTGGAGGACTTGAAGAATGCAAAGGCGATTGTCGATTGGATAGCCTGGGCAGAGCCGCAGTATGACTTTAATCCCATTATAGATGAATGGTGCCGAGAAGCTCCCAAAGAACTCGATTTCAATCTTGAAGCGGAGAACACGAGGACAGTTTCTAGAAATCTTGGGTGCTCGGATGGCGATAAAGGCCTTGGAACTGTGAATGTCTTTATTCCAGAAGTTATTCAGTCAACAGAGAAAGTTCTAATTTTGGAGTATATGGATGGCATACGTCTAAATGACTCTGCTAGTCTGGAAGCTTATGGTATCGACAAACAAAAAATTGTTGAAGATATCACACGCGCTTATGCACACCAAATTTATGTCGATGGATTTTTCAATGGCGACCCCCATCCTGGGAATTTTCTCATCAGCAAGGAACCTCCTCATCGTCCAATTTTGCTCGACTTTGGGCTTACAAAGAAATTACCAAACACCATGAAACTAGCACTGGCAAAGATGTTTTTGGCAGCTGCAGAGGGTGACCATGTTGCTCTTCTATCTTCCTTTGCCGAAATGGGACTTAAGTTGCGTCTTGATATGCCGGAGCAAGCAATGATGGTGACAAATGTATTATTTCGAGCAACAACTCCTGCAAAAGAATCGCAGGTCACCCTTAGAGCTATGACAGAGCAAAGATCAAAGAACGTGAAGGAAATACAAGAAAGAATGAAAATGAGTCAAAAGGAGGCTAAACGTTTTAATCCTGTTGATGCATTTCCTGGTGATATTATAATATTTGCAAGGGTCCTTAATCTTCTAAGAGGTCTTTCTTCCTTGATGGATGTGCACATAGTATATCTAGAGATCATGAGACCATTTGCTGAATTTGTTCTACAAGGAAGTATTAGCAAGGAGCCAAACGTAAATGATCAATGGATCTGGAGAACACCTGCCCATTCTGATGTGGAATCTAAGCTGAGACAACTCTTAATCAAGCTGGGGAATGAGGATAAAATACTTGGAATCCAGGTGTGTGCCTACAAAGATGGAGAGGTCATTATCGATACTGCTGCTGGCGTTCTAGGGAGATACGATCCTCGTCCCGTTCAACCTGATAGTCTTTTTCCAGTGTTCTCAGTAACAAAGGGCATCACAGCTGGAATGTTGCATTGGCTAGTTGATAATGGGAAACTGAATCTTGAGGAAAATGTTTCTAATATTTGGCCGAACTTTGGATCGAACGGTAAAGATATAATAAAGGTCTATCACGTGCTTAACCACACGTCGGGTCTGCATAATGCCACGGTAGATGCGAGGGAAAATCCTTTGTTAATTTGTGACTGGGAGGAATGTTTGAATTGCATGGCTAAATCAACGCCAGAGACTGAACCTGGGCAGGAGCAGTTGTATCACTATTTATCCTATGGCTGGCTATGTGGTGGGATCGTTGAGCACGCAATGGGGAAGAAATTCCAGGAAATTCTCGAAGAAGCATTAGTTTACCCACTCCATGTAGAAGGCGAGCTGTACATCGGAATCCCTCCTGGAGTTGAATCTCGTCTTGCAACACTAACACCAAATCTTGACGATCTTCAAAAGTTCACTGGGATCAATCGTCCTGAACTACCCTCCACCTTCCAGCCGGCCATGATTGCCCAGCTTGCCACAACTTTGACACCTCTATTTAACATGCTCAATACTCGCCGTGCCATTATACCAGCTGCTAATGGACATTGCTCTGCTCGTGCACTGGCACGTTATTACGCAGCCCTGGCCGATGGAGGCGTGATACCGCCACCACATTCCTCATCATCCCAACCACCTCTTGGAAGCCACCCTCACATCCCCAAATTTTCTGTCAAGAATTCTAAGAAGCAGAAAGCTGCCAAAAGTAAGGACAGTCGTACCAACGTGAATAACGACCACGAAAAGAACTCAAGTTCCCCCGAAACAGCTGAAAATAATAGTATCTTCAGCAATACTGGTTACACTAGGCTCCCTACCAATGATCCCAGCACAAGAGTTGGACAAAAGTTTGTAGGCAAAATGTACAAAGACCCCAGAATTCATGATGCCTTTTTGGGTATAGGAAAATTCGAGAATTTGACCATTCCAAATGGCAAGTTTGGGTTAGGATTCTCAAGGTTGAGATCAAAGGAAGGTTCTTTTATTGGGTTTGGCCATTCAGGAATGGGTGGATCCACAGGTTTTTGTAACATTGAACACAGGTTTGCCATGTCCGTGACCCTCAACAAAATGTCTATTGGGGATGTCACTGCCAGCATAATTCAGCTCGTTTGTTCCGAGTTGAATATCCCGTTGCCAGAAGAATTTTCAGCGCTCGGGATTTCTGGACAGCATGGTAGAGTGGAAGCTCCTTTGATTAACCGAGGATGA 2886 43.87 MNRLFEFRVIPQMAWGNIYRRRMKVFGLALVIYLDYKALEQREKWISKSKRAALWERAHERNAKRALSLIIELEGLWVKFGQYLSTRADVIPDAYIRLFKQLQDSLPPRPLQEVRQTIQKELGKSITYMFANFVEAPLATASIAQVHRATLLDGREVVIKVQHEGIKTVILEDLKNAKAIVDWIAWAEPQYDFNPIIDEWCREAPKELDFNLEAENTRTVSRNLGCSDGDKGLGTVNVFIPEVIQSTEKVLILEYMDGIRLNDSASLEAYGIDKQKIVEDITRAYAHQIYVDGFFNGDPHPGNFLISKEPPHRPILLDFGLTKKLPNTMKLALAKMFLAAAEGDHVALLSSFAEMGLKLRLDMPEQAMMVTNVLFRATTPAKESQVTLRAMTEQRSKNVKEIQERMKMSQKEAKRFNPVDAFPGDIIIFARVLNLLRGLSSLMDVHIVYLEIMRPFAEFVLQGSISKEPNVNDQWIWRTPAHSDVESKLRQLLIKLGNEDKILGIQVCAYKDGEVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLNLEENVSNIWPNFGSNGKDIIKVYHVLNHTSGLHNATVDARENPLLICDWEECLNCMAKSTPETEPGQEQLYHYLSYGWLCGGIVEHAMGKKFQEILEEALVYPLHVEGELYIGIPPGVESRLATLTPNLDDLQKFTGINRPELPSTFQPAMIAQLATTLTPLFNMLNTRRAIIPAANGHCSARALARYYAALADGGVIPPPHSSSSQPPLGSHPHIPKFSVKNSKKQKAAKSKDSRTNVNNDHEKNSSSPETAENNSIFSNTGYTRLPTNDPSTRVGQKFVGKMYKDPRIHDAFLGIGKFENLTIPNGKFGLGFSRLRSKEGSFIGFGHSGMGGSTGFCNIEHRFAMSVTLNKMSIGDVTASIIQLVCSELNIPLPEEFSALGISGQHGRVEAPLINRG 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2456786 2467803 - CmaCh09G005450.1 Cma09g00545 300550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00545 961 SUPERFAMILY beta-lactamase/transpeptidase-like 484 926 IPR012338 -
Cma09g00545 961 CDD ABC1_ADCK3-like 101 352 - -
Cma09g00545 961 MobiDBLite consensus disorder prediction 804 837 - -
Cma09g00545 961 PANTHER ABC1 FAMILY PROTEIN 13 945 - -
Cma09g00545 961 MobiDBLite consensus disorder prediction 789 803 - -
Cma09g00545 961 Pfam ABC1 atypical kinase-like domain 101 349 IPR004147 -
Cma09g00545 961 Gene3D - 486 856 IPR012338 -
Cma09g00545 961 Gene3D - 858 934 IPR012338 -
Cma09g00545 961 Pfam Beta-lactamase 490 767 IPR001466 -
Cma09g00545 961 PANTHER ABC1 FAMILY PROTEIN 13 945 - -
Cma09g00545 961 SUPERFAMILY Protein kinase-like (PK-like) 103 326 IPR011009 -
Cma09g00545 961 MobiDBLite consensus disorder prediction 761 837 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00545 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101216220 1662.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01591 Cma09g00545 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00545 Cma-Chr9:2456786 Cma03g00776 Cma-Chr3:6032070 4.05E-43 dispersed
Cma13g00782 Cma-Chr13:6722564 Cma09g00545 Cma-Chr9:2456786 3.41E-58 transposed
Cma01g01591 Cma-Chr1:10986688 Cma09g00545 Cma-Chr9:2456786 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008509 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00545 Cma_Chr09 FPKM 23.819403 28.056681 23.29339 24.532906 13.286701 13.591855 14.132883 54.765942 48.741299 50.47625