Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00548 ATGGAGTCACGCTTCTCACTCATTTTTTCTTTACTCTTCCTTGCAGTTGCTATTAGTCATGCTAATCTCTCGCCCGAACAGTATTGGAACCTTCTAGAAGGCAAAAGTACTTCGGTGATTGTCGGCAAAGGAGGCGTAAACGTCAACACCGGGAAGGGGAAGGCCGGAGGCACCTCCGTTAACGTCCACGCTCCAAAAGGGAAGACCGGAGGCACTTCCGTTAACGTTGGCAAAGGCGGGGTTAACGTCCACGCTCCAAAAGCGAAGCCCGGAGGAGGCACCTCCGTTAACGTCGGGAAAGGAGGCGTCAACGTCCACACCGGTCACAAAGGGAAGCCAGTTTACGTCGGAGTTAAGCCAGGCTATAATCCCTTCAATTACATCTACGCAGCCAAAGAAACCCAACTTCACGACGACCCAAATACCGCCCTGTTCTTTCTGGAAAACAAACTCCGGCCCGGTTCAAAGCTGACCCTTCATTTCCCCAAACCAACTTCCCCGGCCACGTCCACTTTCTTGCCACGTGAAGTAGCCAAAACCGTTCCCTTCTCATCCCAAAAACTCCCCCAAATCCTCGACCGGTTCTCAGTTAAACCCACGAGTTTTTCGGCCCAGCTGATCCGGAACGCCGTCGAGGAATGCGAGGCGCCTGGCATCGCCGGCGAGGATAAGTACTGCGCCACGTCGTTGGAGTCGATGGTGGATTTCAGCACCTCTAGGTTGGGGAAGGAGGTGGTGTTGGTCTCGACGGAAGTCGAGAAAGAGACGGGTTTGCAGCAGTTTACGGTGGCGAATTTGGCGAAGAAATCGTCTCCAGCGACGACGACGGCGGTTGTGTGCCACAAGTTGAGCTATCCGTACGCAGTGTTTTATTGCCATTCCACGCAACACACGCGAGTTTACAAGGTTGGTCTGGTCGGTGCTGACGGGACCAAAGCTGACGCGGTGGCCGTGTGTCATACCGACACGTCAGCTTGGAACCCAAAGCATTTGGCCTTTCAAGTGTTGAAGATCAAGCCAGGGACCGTTCCAGTTTGCCACTTCCTTCCACAAGACCACCTTATTTCGGTCTCTGTGGTTCGCGCCTCTTCCATCGTTATATCATCAGAGATCTTCAGCACTTTCTTTCACCTTTCATGGTCGCTTTCAGCTGCATTTCTTATTGTGGAGGCCCGCATTGGTATTATGGTAGAGATAGAGCAATTGGAGAATATTGAATTTCAATGGGGCAAAAGGAAAGGGATTGGTGGGAAGAAGAAGGACGTGACCTTTTATGAATCTTTTACTTACGACGGTGTAGAATATTTTCTTTATGACTCTGTCTACCTATATAAGGAAGGTGAACCAGAGCCTTATATTGGCAAAATTCTTAAAATCTGGCAGAATCCTGATAAGACAAAGAAAGTAAAAATTCTTTGGTTTTTTCGGTCTTGTGAAATTCGCAATTATCTTGGAGCTGAAGACACACGGGACGATGAATTATTTTTGGCATCCGGTGATGGCGTTGGCCTTGCCAATATTAATCCTCTGGAAGCAATTGCTGGAAAGTGCAACGTTATCTGCATTTCAGATGACAGCAGAAATCCACGACCTTCAGATGAAGAACTCGAAAAGGCTGATTTTGTATTTTTTCGTACATTTGATGTTGGAAAACAAGAGGTCTGCAATGAGATGTGTGCAAAAATTGCTGGAGTAGAAGTTAAATTTTTACTTAATAGATTAGATACGTCAAAAGATGTTACGAGGACCGATACGGATGGGAAAGATGCAAGTGTCATTGCAATTGTAAATACTGAATCAAAAGATCCTTCTGGACGTAATACTTCCGATGGGGAACTAACTTTGAAGACTACTGCAAACTCTTTCAAGAAGTCCACAAAGGAAAATGTTGAGTTGGAGGAGCCTATTGAGAAATCCTCCAATGGAGAGAGGTCTGGTGTATGTGTGATTGATGGGGGAAATGGAATGGCTAGAACTAGTAGTAAACAAGAAAACATCTTAGATGATAAGGTATCTCCGAAGCCTGAAATTGATTCTACTGAGACACACGGTAAAGGTGTTGAAGCTCGAGCTAAGGATGTTGACGGTAGAGTTAAAAGCCCCAGGGTCTCTGCTGAAGATGAACATAGGTCAGCAAAGAAGGCAAAACTAGATAGTTCTGTTCAATTATCCCATGGAAAGACCAAGAGTGACATTGAAAGGCTTGCCCTCAATTGCAAAAATGGCTATACACCTAAGGTTCTTGCTTCTGAAACCAAAGATTATCATGAAACCAAAGATAGCCTTATAAAGAAGCCCAAGCTAGATGAGAAGCCAACAAAGGTTTCTAATGGCAAGAACCTAAAGGCCTCTTCCCAAATATCTTCAGTTACAGACTGCAAAATAGATGGTGAAATTGTGGAAGTTACTAGAAGGCCAGATGCTGATAGAAGCAGATGGTTCAAGGGACTGCCGTGGGAAGAAAGAATAAAAGATGCATATGAGCAAGGAACACTTGTTCTAATTCAGAATTTGGATCCTGCTTACACTTCAGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAACGAGAGTTGCACAGCTAAGATGATTCAGCGTACTGCAATTTCTATGCCTCACATAGGTCAAGCTCATGTTGTATTCAAAACTAAGGAAGCAGCGGAGAAAGTGGTTCGAAAATTAGATGAAGGTTGCTTATTACTTGCAAATGGGAGAGCTCTTGTTGGTAGCTTTGCAATTCCTCAACTTCCGTCAAAGAAACAAATTTTTTTTGGGCATCACAGTATTGATAAGCTTAGACATCTAATGCAACGTGAGATGAAAGAAGCTGTATCAACTTCACATTGTTCTCAGCCGAACACAGTAGAATACGACATGGCCATGGAATGGTGTTTACTACAAGAAAGATCAGAACGCGCCTGCAGAAAGTTGTTTAAGCAACAAGAAGAGGAGTTAAGAGAACTCAAGGGCAAGCTGAAATCTAGATGA 2988 45.15 MESRFSLIFSLLFLAVAISHANLSPEQYWNLLEGKSTSVIVGKGGVNVNTGKGKAGGTSVNVHAPKGKTGGTSVNVGKGGVNVHAPKAKPGGGTSVNVGKGGVNVHTGHKGKPVYVGVKPGYNPFNYIYAAKETQLHDDPNTALFFLENKLRPGSKLTLHFPKPTSPATSTFLPREVAKTVPFSSQKLPQILDRFSVKPTSFSAQLIRNAVEECEAPGIAGEDKYCATSLESMVDFSTSRLGKEVVLVSTEVEKETGLQQFTVANLAKKSSPATTTAVVCHKLSYPYAVFYCHSTQHTRVYKVGLVGADGTKADAVAVCHTDTSAWNPKHLAFQVLKIKPGTVPVCHFLPQDHLISVSVVRASSIVISSEIFSTFFHLSWSLSAAFLIVEARIGIMVEIEQLENIEFQWGKRKGIGGKKKDVTFYESFTYDGVEYFLYDSVYLYKEGEPEPYIGKILKIWQNPDKTKKVKILWFFRSCEIRNYLGAEDTRDDELFLASGDGVGLANINPLEAIAGKCNVICISDDSRNPRPSDEELEKADFVFFRTFDVGKQEVCNEMCAKIAGVEVKFLLNRLDTSKDVTRTDTDGKDASVIAIVNTESKDPSGRNTSDGELTLKTTANSFKKSTKENVELEEPIEKSSNGERSGVCVIDGGNGMARTSSKQENILDDKVSPKPEIDSTETHGKGVEARAKDVDGRVKSPRVSAEDEHRSAKKAKLDSSVQLSHGKTKSDIERLALNCKNGYTPKVLASETKDYHETKDSLIKKPKLDEKPTKVSNGKNLKASSQISSVTDCKIDGEIVEVTRRPDADRSRWFKGLPWEERIKDAYEQGTLVLIQNLDPAYTSGEVEDIVWHAFNESCTAKMIQRTAISMPHIGQAHVVFKTKEAAEKVVRKLDEGCLLLANGRALVGSFAIPQLPSKKQIFFGHHSIDKLRHLMQREMKEAVSTSHCSQPNTVEYDMAMEWCLLQERSERACRKLFKQQEEELRELKGKLKSR 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2476458 2486797 - CmaCh09G005480.1 Cma09g00548 300553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00548 995 ProSiteProfiles BURP domain profile. 145 359 IPR004873 -
Cma09g00548 995 MobiDBLite consensus disorder prediction 52 78 - -
Cma09g00548 995 Gene3D - 819 915 IPR012677 -
Cma09g00548 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 831 914 IPR000504 GO:0003723
Cma09g00548 995 MobiDBLite consensus disorder prediction 663 716 - -
Cma09g00548 995 ProSiteProfiles BAH domain profile. 433 558 IPR001025 GO:0003682
Cma09g00548 995 Gene3D - 400 557 IPR043151 -
Cma09g00548 995 CDD RRM_SF 833 907 - -
Cma09g00548 995 SUPERFAMILY RNA-binding domain, RBD 823 915 IPR035979 GO:0003676
Cma09g00548 995 MobiDBLite consensus disorder prediction 598 625 - -
Cma09g00548 995 Pfam BAH domain 439 524 IPR001025 GO:0003682
Cma09g00548 995 PANTHER PROTEIN ANTI-SILENCING 1 396 994 - -
Cma09g00548 995 MobiDBLite consensus disorder prediction 626 640 - -
Cma09g00548 995 Pfam BURP domain 144 355 IPR004873 -
Cma09g00548 995 SMART BAH_4 433 556 IPR001025 GO:0003682
Cma09g00548 995 MobiDBLite consensus disorder prediction 598 725 - -
Cma09g00548 995 SMART BURP_2 143 359 IPR004873 -
Cma09g00548 995 PANTHER PROTEIN ANTI-SILENCING 1 396 994 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00548 - - - mcha:111007160 888.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00009 Cma-Chr5:33748 Cma09g00548 Cma-Chr9:2476458 7.16E-32 dispersed
Cma09g00548 Cma-Chr9:2476458 Cma11g01107 Cma-Chr11:6143626 1.75E-54 dispersed
Cma01g01593 Cma-Chr1:11001845 Cma09g00548 Cma-Chr9:2476458 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g345 . . . . . . . Bma01g02488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04428 . . . . . . . . . . . . . Cma09g00548 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00548 Cma_Chr09 FPKM 4.993454 6.398857 150.517746 150.501709 38.62566 37.66383 36.478439 8.60006 8.442685 8.064169