Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00552 ATGGCGCGCGAATTTGGAGGAATATGCGCGGGTTTTCGGTCAATGGCGATGACGATGTTCAACTTTGCCATAGCGTTGGCTATGGTTTCCGCTGAGAGAAAAATGAAGCTCGAAACGGCGAGGTTGGACGGAGATGGAGGTTCCGATGATTTGAATCTGATCCGAGGAGCTTTGAATTTCTTGTGGCAATCGGACAGAACGGGGTATCATCACGTTTGGCCTGAAATGGAATTTGGGTGGCAGATTGTATTGGGTTCTGTTATTGGATTTCTGGGTGCTGCATTTGGGAGTGTAGGAGGCGTTGGTGGTGGGGGAATTTATGTTCCTATGCTTAGTCTAATCATTGGGTTCGATCCGAAGTCATCGACAGCTATATCAAAATGTATGATTATGGGAGCATCAGTATCAACCGTCTACTATAATCTTAAGCTAAGACATCCAACACTTGATCTTCCTATCATTGACTATGATTTGGTGCTGCTTATCATGCCTATGCTCATGCTGGGCATCAGCATTGGGGTAGTTTTCAATGTCATATTTGCTGATTGGATGGTCACTGTCCTCCTCATCGTTCTCTTCTTAGCTACATCCACGAAATCGTTTCTTAAGGGAGTTGAAACTTGGAAGAAAGAAACTATAATGAAAACGGAGGCTGCTAGGCGTGCTGAATCAAATGATCTTCAAGCCAATACAGCATATGCTCCTCTTCCTAGTGGCCCGAGCCAACGGCCCGAATTGGACCTTGATCGAGAGGTTCCAATGCTGAAGAATGTGTACTGGAAAGAAATGGGACTTTTTGTATTAGTTTGGGTTGCTTTCCTAGCGATCCAAATTATCAAGAAGCATTCACCCAATTGTTCATGGGAATACTGGCTACTCAACTTACTGCAGATGCCAATTGCCTTTGGTGCATCTGGCTATGAGGCAGTTAGCTTGTACAAAGGACGGAGAAAAATTGCTTCTCTGGGAAATCAGAAGACTAACTTTCAAGTTTCCCAGCTTGTTCTATATTGCTTCTTGGGCATAGTGGCCGGAGTTGTTGGCGGCCTTCTTGGCCTTGGTGGAGGATTTATAATGGGACCCCTGTTTTTGGAGCTCGGCATTCCCCCGCAGGTATCGAGTGCTTCAGCAACCTTTGGAATGACATTCTCTTCGTCCATGTCCGTTATACAATACTATCTACTAAACCGTTTTCCCGTTCCTTATGCTGTTTACTTCACCATTGTGGCCGCAATAGCTGCATTTGTTGGACAACACGTAATAAGAAAACTGATCAACTTGATTGGAAGAGCATCCTTAATTATCTTCATCTTGTCCTTCACAATATTCGTCAGTGCAATTTCTCTAGGTGGCGTTGGAATCTCGAAGACGATTGGACAAATTCAGCGTCACGAATACATGGGCTTCGAGAATTTGTGCAAATACGACGCATAA 1434 44.49 MAREFGGICAGFRSMAMTMFNFAIALAMVSAERKMKLETARLDGDGGSDDLNLIRGALNFLWQSDRTGYHHVWPEMEFGWQIVLGSVIGFLGAAFGSVGGVGGGGIYVPMLSLIIGFDPKSSTAISKCMIMGASVSTVYYNLKLRHPTLDLPIIDYDLVLLIMPMLMLGISIGVVFNVIFADWMVTVLLIVLFLATSTKSFLKGVETWKKETIMKTEAARRAESNDLQANTAYAPLPSGPSQRPELDLDREVPMLKNVYWKEMGLFVLVWVAFLAIQIIKKHSPNCSWEYWLLNLLQMPIAFGASGYEAVSLYKGRRKIASLGNQKTNFQVSQLVLYCFLGIVAGVVGGLLGLGGGFIMGPLFLELGIPPQVSSASATFGMTFSSSMSVIQYYLLNRFPVPYAVYFTIVAAIAAFVGQHVIRKLINLIGRASLIIFILSFTIFVSAISLGGVGISKTIGQIQRHEYMGFENLCKYDA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2502659 2507684 + CmaCh09G005520.1 Cma09g00552 300557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00552 477 Pfam Sulfite exporter TauE/SafE 339 444 IPR002781 GO:0016021
Cma09g00552 477 Pfam Sulfite exporter TauE/SafE 87 202 IPR002781 GO:0016021
Cma09g00552 477 PANTHER CEREBLON 11 475 - -
Cma09g00552 477 PANTHER SULFITE EXPORTER TAUE/SAFE FAMILY PROTEIN 3 11 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00552 - - - csv:101214783 786.949
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01599 Cma09g00552 CCT
Cma01g01599 Cma09g00552 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01183 Cma-Chr3:7903578 Cma09g00552 Cma-Chr9:2502659 6.34E-125 dispersed
Cma09g00552 Cma-Chr9:2502659 Cma13g00709 Cma-Chr13:6396575 5.38E-42 dispersed
Cma01g01599 Cma-Chr1:11033411 Cma09g00552 Cma-Chr9:2502659 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g330 Blo01g01766 . . Bda03g00422 Bpe02g01195 Bpe02g00179 . . . . Cma01g01599 . Car09g00484 . . . Cpe06g00419 . . . . . . . . . . . . . . Cone4ag1534 Cone7ag1418 Cone17ag1108 . Lsi04g02226 Csa03g04438 Chy04g00262 . Blo17g00056 Blo18g00070 . Bda13g01314 Bpe14g00533 Bpe04g00388 . Bma02g00071 Sed13g2122 Cmo01g01646 Cmo09g00542 Cma09g00552 . Car01g01219 . . Cpe02g00379 Bhi09g02422 Tan01g3781 Cmetu04g1178 . Hepe01g2120 . . . . . . . . . . . . Cme04g00293
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001976 6 3 4 3 6 2 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 2 1 2 2 3 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00552 Cma_Chr09 FPKM 58.350365 56.52924 2.997075 2.978598 6.694925 6.226361 5.537239 15.072172 15.350666 17.244825