Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00556 ATGTCAGGTGGCGGTTGCAGCATAGTTTGGTTCAGAAGAGATCTCAGGGTTGAAGATAACCCTGCTCTTACCGCCGCCGTCAGGTCCGGCGCCGTCGTTGCCGTCTTCATCTGGGCACCGGAGGAAGAAGGTCACTACTATCCCGGCAGAGTCTCGCGATGGTGGCTCAAACAGAGCTTGGCTCATCTCGATTCCTCTCTTAGAAGCCTTGGTACTTTTCTTGTCACTAAGAGATCCACCAACACCATTTCTGCTTTGCTCGACGTCGTTAAAGCCACTGGTGCTTCTCAGCTCTTCTTCAATCATTTATACGATCCTTTATCACTCGTTCGGGATCATCGAGCGAAGGAGGTGTTATCTGCTCAAGGCATCGGTGTGAGGTCGTACAATGCCGATTTACTGTACGAACCGTGGGACGTTAAGGATGCCAATGGCAATCCATTTACCACCTTTGCTGGTTTCTGGGAGAGATGTCTCAGCATGCCTTGTGATCCAGAGGCACCACTTCTCCCACCTAAGAGAATAATTTCAGGTGATGCATCTAGGAGGTGCCAATGTGACACATTGTTATTTGAAGACGAATCGGAGAAGGGAAGCAACGCGCTTCTTGCCCGAGCATGGTCTCCTGGATGGAGCAACGCGGACAAGGCTTTGACCACGTTCATCAATGGACCATTAATCGAGTACTCAAAGAATCGAAGGAAGGCAGATAGTGCAACCACCTCATTTCTGTCTCCCCACTTACATTTCGGAGAGGTAAGCGTGAGAAAAGTGTTTCATCTCGTTCGAATGAAGCAGGTTTTATGGGCGAATGAAGGGAACAAGGCTGGCGAAGAGAGTGTCAACTTGTTTCTCAAGTCTATAGGGCTCAGAGAGTATTCCAGATACATGAGTTTCAACCATCCGTACAGTCATGAAAGGCCTCTTCTTGGGCATCTTAAATTCTTCCCTTGGGTTGTGGATGAAGGCTATTTTAAAGCATGGAGGCAAGGAAGGACTGGTTATCCATTAGTGGATGCTGGTATGAGAGAATTGTGGGCTACGGGGTGGCTGCACGATCGGATCCGAGTTGTAGTTTCGAGTTTCTTTGTCAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTACTTCTGGGATACTCTCTTGGATGCCGACCTTGAGAGTGATGCTCTTGGTTGGCAATACATATCTGGCACTCTTCCCGATAGTCGTGAATTTGATCGTATCGACAACCCACAGCTTGAGGGTTATAAATGCGACCCGTATGGAGAATACGTCCGGAGATGGCTTCCTGAACTTTCTAGATTGCCCACTGAATGGATTCATCATCCATGGAATGCACCGGAGTACGTACTCCAAGCTGCTGGGATCGAGCTTGGATCGAACTACCCCCTTCCCATCGTAGGGCTGGATGCAGCTAAAGCAAGGTTGGAAGAAGCGCTGTCGGAGATGTGGCAACAAGAAGCAGCTTCAAGGGCTGCGATCGAGAATGGAACTGAAGAGGGACTTGGGGACTCTTCCGAGTCGATCCCAATTGCATTTCCTCAGGAAATAACAATGGAGGAGGAGGACGTTGAGCCTGCAAGGATGAACGCTCATACGATTCGGTGCTACGAGGATCAGATGGTCCCAAGCATGACGAGTTCGGTGAGATTAGGAGATGAACCTTCTCTGAACATTCAAAGTACAGCAGAAGATGGTAGAGCAGAAGTACCTATAAATGCAAATTTAAACCAAGAGCCAACCAGAAATGTAGTGAACCCAAGAGTTCGGCCAACCAATCCAACGCAGACTCGACTTCCCTATACCCCAGGTATCGGCCTAGGAACTGCTGCTGAAGATTCCACTGCAGAGTCCTATTCCAGTAGTGATGTGAGACGAGAGAGAGACGGAGGTGTGGTGCCTGTTTGGTCTCCACCGAGTTCGAGTTACACCGAGCAGTTTGTGGTCGACGAAAATGGCATCGGAACAAGCTCTTCGTTCTTGCAAGGGCATCAACAGAGTCATCAAATAATTAACTGGAGGCAGCTATCTCAGACTGGGTAA 2049 49.05 MSGGGCSIVWFRRDLRVEDNPALTAAVRSGAVVAVFIWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTFLVTKRSTNTISALLDVVKATGASQLFFNHLYDPLSLVRDHRAKEVLSAQGIGVRSYNADLLYEPWDVKDANGNPFTTFAGFWERCLSMPCDPEAPLLPPKRIISGDASRRCQCDTLLFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRMKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKCDPYGEYVRRWLPELSRLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGLDAAKARLEEALSEMWQQEAASRAAIENGTEEGLGDSSESIPIAFPQEITMEEEDVEPARMNAHTIRCYEDQMVPSMTSSVRLGDEPSLNIQSTAEDGRAEVPINANLNQEPTRNVVNPRVRPTNPTQTRLPYTPGIGLGTAAEDSTAESYSSSDVRRERDGGVVPVWSPPSSSYTEQFVVDENGIGTSSSFLQGHQQSHQIINWRQLSQTG 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2529295 2533065 + CmaCh09G005560.1 Cma09g00556 300561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00556 682 MobiDBLite consensus disorder prediction 586 604 - -
Cma09g00556 682 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Cma09g00556 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Cma09g00556 682 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 483 IPR014134 GO:0009785|GO:0009882
Cma09g00556 682 PRINTS DNA photolyase signature 143 159 IPR002081 -
Cma09g00556 682 PRINTS DNA photolyase signature 333 349 IPR002081 -
Cma09g00556 682 PRINTS DNA photolyase signature 353 371 IPR002081 -
Cma09g00556 682 PRINTS DNA photolyase signature 392 406 IPR002081 -
Cma09g00556 682 PANTHER CRYPTOCHROME 1 604 IPR002081 -
Cma09g00556 682 Gene3D - 134 294 - -
Cma09g00556 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Cma09g00556 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Cma09g00556 682 Pfam Blue/Ultraviolet sensing protein C terminal 512 624 IPR020978 -
Cma09g00556 682 PANTHER CRYPTOCHROME-1 1 604 - -
Cma09g00556 682 Pfam FAD binding domain of DNA photolyase 284 482 IPR005101 -
Cma09g00556 682 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Cma09g00556 682 Gene3D HUPs 8 207 IPR014729 -
Cma09g00556 682 Pfam DNA photolyase 7 161 IPR006050 -
Cma09g00556 682 MobiDBLite consensus disorder prediction 586 639 - -
Cma09g00556 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 489 IPR036134 -
Cma09g00556 682 Coils Coil 471 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00556 K12118 CRY1; cryptochrome 1 - csv:101213649 1314.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01439 Cma09g00556 CCT
Cma01g01604 Cma09g00556 CCT
Cma01g01439 Cma09g00556 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00165 Cma-Chr17:851311 Cma09g00556 Cma-Chr9:2529295 0 transposed
Cma01g01604 Cma-Chr1:11059657 Cma09g00556 Cma-Chr9:2529295 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
Vvi4g277 Blo01g01778 Blo12g00752 . Bda03g00434 . Bpe02g00166 Bma04g00411 Bma01g02558 . . Cma01g01439 . Car09g00558 . . . Cpe06g00492 . . . . . . . . . . . . . . . . Cone17ag1132 Cone20ag0590 Lsi04g02325 Csa03g04545 Chy04g00157 . . . . . . Bpe04g00073 . . Sed05g1507 Cmo01g01491 Cmo09g00613 Cma09g00556 . . . . Cpe02g00509 Bhi09g02572 Tan01g3928 Cmetu04g0690 . Hepe01g2216 Mch11g0764 . . . . . . . . . . . Cme04g00182
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005916 1 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00556 Cma_Chr09 FPKM 3.970226 4.096879 43.475712 42.990688 18.989418 24.170673 20.174898 30.124529 29.979446 28.308832