Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00557 ATGGATAAGCTGTGCTGTTTGAATGCTTCCTACTCTCGGGTTCGGTCGGCGTCGAACTACGGTAAAGGAAGAAGCCATGAGGGGGTAATCAAGTATGGATTCTGCCTGGTGAAAGGGAAAGCTAAGCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAAATTCAAGAACATGAATTGGGGCTGTTTGCTATCTACGATGGCCATGTTCAACAAACTGTGCCTGCTTACTTACAAAAGCATCTCTTTTCTAATATCCTCAAAGAGGAGGACTTTTGGGTCGACACGAACAGCTCCATCTCGAAAGCCTACGAGAAAACGGACCAGGCGATTCTGTCTCACAGCTCTGACTTGGGTTGTGGCGGATCAACTGCTGTTACTGCTATTCTGATTAACGGTCAACGACTATGGGTGGCCAACGTCGGAGATTCACGCGCAGTTCTTTCGAGAGGCGGTGAAGCTATACAAATGACTATCGATCACGAGCCGAATTCCGAACGCAGCATCATCGAGAATAAAGGTGGCTTCGTTTCTAACATGCCAGGAGACGTACCTCGAGTGAATGGTCAGCTAGCAGTTTCGCGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTACGATCGGACCCCGACATACGTGATATTAACATAGACGCCAACACGGATGTATTAATTCTCGCTAGTGACGGTCTTTGGAAGGTGATGGCGAATCAAGAAGCGGTCGATATCGCACGAAGAATCAAGGACCCGATGAAGGCTGCAAAGCAGTTAATAACAGAGGCTTTGCTGAACGGGAGTAAAGACGACATATCGTGCATTGTCCTTCAAGTGGTGAGATCTTTTGATCGTATTCTTGGTGGCTTTGTTCTGGAGGCGTACATTGATTCTCTGAGAGCACTCTGTTCTGAATCCCCCGATCTTGCTTCTTTCAATTTCTTCTTCTATAAGGTAAATCTGGAGGACCTCATCGACCAAAGTGAAGCTTCTGAGGAGAAGCTGCCTCGTTCATAA 1014 46.75 MDKLCCLNASYSRVRSASNYGKGRSHEGVIKYGFCLVKGKAKHPMEDYHVAKFVQIQEHELGLFAIYDGHVQQTVPAYLQKHLFSNILKEEDFWVDTNSSISKAYEKTDQAILSHSSDLGCGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAIQMTIDHEPNSERSIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDANTDVLILASDGLWKVMANQEAVDIARRIKDPMKAAKQLITEALLNGSKDDISCIVLQVVRSFDRILGGFVLEAYIDSLRALCSESPDLASFNFFFYKVNLEDLIDQSEASEEKLPRS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2534104 2537616 + CmaCh09G005570.1 Cma09g00557 300562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00557 337 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cma09g00557 337 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 10 278 - -
Cma09g00557 337 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Cma09g00557 337 PANTHER PROTEIN PHOSPHATASE 2C 10 278 IPR015655 GO:0004722|GO:0006470
Cma09g00557 337 SMART PP2C_4 23 276 IPR001932 -
Cma09g00557 337 CDD PP2Cc 30 278 IPR001932 -
Cma09g00557 337 Gene3D - 26 283 IPR036457 -
Cma09g00557 337 SUPERFAMILY PP2C-like 26 278 IPR036457 -
Cma09g00557 337 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cma09g00557 337 SMART PP2C_SIG_2 42 278 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01606 Cma09g00557 CCT
Cma01g01606 Cma09g00557 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00396 Cma-Chr4:2012083 Cma09g00557 Cma-Chr9:2534104 8.67E-149 dispersed
Cma09g00557 Cma-Chr9:2534104 Cma16g00257 Cma-Chr16:1214713 6.16E-144 dispersed
Cma01g01606 Cma-Chr1:11067033 Cma09g00557 Cma-Chr9:2534104 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00557 K17506 - csv:101213414 507.679