Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00558 ATGACAAAATTCAATTGCTTCTCTGGCCGAACAGGGAAGAAGAAGAAAACCAAGGCATGTTTTCTTTCATTATTCATCGATTTGGAACCGGAGAAGCCTACCGAATTGAAATATCTGTCGAAAACTTTGCATGTCAGCAGCATCCATCACTGTGAGGAGCCTCTCCAGGGTGGAGAAAGGAAACCGTCTACCCTGGACGTTTCAGTTCTGTACCCATCAGAGAATAATTCTAAGCTGGATGATAAGTTAACGAACAATCATGAGAGTTCTGTAGCAGGAGCAGCAGTAGAACCAGCATATGAAGGGGAGGATGAGCGAGACGACAACTCGATCAAATGGAACCCTTCTGACTTTGATCTCCCTGCTCAAGACACATGTGGAGAAGAATTTGAGTTTCAATTTCCAAGTTCATTGGGAAAACAATTAGATAAGATCATTATTGAAGGGGTTGATACAATCCAAAGTGGACATGTTAGTGATCCTGGAATTGGTAAGGCAGTATCTTGGGCATTACCTAAACTTAAACGCTCATGTTCTAATCTGGAAAGCAGGGATGTGCTTAGAAACTTATCTCCTCATCAGTTGCCTCCTCCAATGTCTCAGTCTTTCGAAAAACTACAAGAATTGGCAGACGAAATGAGGAACTATGTTGATCCGGGCAGTCCAGGGTCTGTTATGACTCATCACAGTGCAGATAAAGTCATGTTGAAGAAGCGTTCTTCAAGCCAGATTCTACCTTCCAGAAGCAGGAGATTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTACAAAAGCCGTGTACTACCAATACCAAGGCTCTTCCCACCAGCTCTGCTTTCAACCAGCAAGGTGGGTATTGCTCTGACAATCTTGAGCCGAACAGAGCAGCGGGGAAGAGTATAATGGAATCACCTGGATCAGGAGAATGCCCCGAAAACAACGAAAGCAATGATCAGGATCAGGAGAATGTGTGTATTGGAGTTTCTGGTTTATGGCCACAAAACCAGTGGGTTGCATTTTCAGCAGAATCATCTTCTACCCTAAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAACTAGAACCCTGTCTTTCAATTGACGCGGTTGGGGATGACAATGATTCAGATACTTTCTTCCCGCTAACTCCAGAGCGAACTGCAACTCACACACCCCGACGTGGAGAACCCAATCTGACAGAAGAGATTTTGTATGCCAATAGCATCATTGGGTCGCTCAATTCTTCCTCAACCGTGGCTCACATCTCTGGCATTGGCTTAAAAGCCATACCCACAATCTCGCACCTATCCGGTCTTAGATCTGTCAACTTGTCTGGAAATCTCATAGATCACATTAACCCTGGATCACTGCCCAAGGGACTGCATACGCTTAACTTGTCCAGGAACATGATCATTGCCATTGAAGGACTCAAAGAGTTAGCACGACTTCGGATACTCGATCTGAGTTACAATCGTATATCTCACATAGGACATGGGTTGTCAAACTGTGCAATTATTAAGGAACTCTATCTTGCTGGCAACAAGATTAGTGATGTTGATGGACTGCATCGACTCTTGAAGCTCACGGTTCTCGACCTAAGCTTCAACAAGATTTCAACAAACAAAGCTCTGGCCCAACTTGTTGCCAACTACAACTCTCTTCAAGCTCTTAATCTGTTGGGGAATCCAATTCAAAGTAATGTGAGCGACGACCAGCTACGCAAGGCAGTTGTTGGCCTTCTTCCAAGTCTTGTTTATCTAAACAAGCAGCACATCAAAGCACAGAGAGCTCGAGAAGTCGCGACTGACAGCGTTGCCAAAGCTGCACTAGGGAACGGTAGTTGGAATTCTCATAGAAGAAAATCAAGGAAAACGAGCCATATAGCATCATCATCTTCCATCAGTGGGCACAGGAGTAGTGCAAGTGTTGCACACAAAGGCAGGCACAGATCAAAAGCGCCAACCTTGCGCCATTATTCTCTGGGGATGGATTCATCGGCCCTTCCATCATCATCACGTCGTTAG 2025 45.04 MTKFNCFSGRTGKKKKTKACFLSLFIDLEPEKPTELKYLSKTLHVSSIHHCEEPLQGGERKPSTLDVSVLYPSENNSKLDDKLTNNHESSVAGAAVEPAYEGEDERDDNSIKWNPSDFDLPAQDTCGEEFEFQFPSSLGKQLDKIIIEGVDTIQSGHVSDPGIGKAVSWALPKLKRSCSNLESRDVLRNLSPHQLPPPMSQSFEKLQELADEMRNYVDPGSPGSVMTHHSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPCTTNTKALPTSSAFNQQGGYCSDNLEPNRAAGKSIMESPGSGECPENNESNDQDQENVCIGVSGLWPQNQWVAFSAESSSTLRRVDEWVKDLQLEPCLSIDAVGDDNDSDTFFPLTPERTATHTPRRGEPNLTEEILYANSIIGSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIDHINPGSLPKGLHTLNLSRNMIIAIEGLKELARLRILDLSYNRISHIGHGLSNCAIIKELYLAGNKISDVDGLHRLLKLTVLDLSFNKISTNKALAQLVANYNSLQALNLLGNPIQSNVSDDQLRKAVVGLLPSLVYLNKQHIKAQRAREVATDSVAKAALGNGSWNSHRRKSRKTSHIASSSSISGHRSSASVAHKGRHRSKAPTLRHYSLGMDSSALPSSSRR 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2537917 2540358 + CmaCh09G005580.1 Cma09g00558 300563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00558 674 Pfam Leucine-rich repeat 441 548 - -
Cma09g00558 674 Gene3D Ribonuclease Inhibitor 502 598 IPR032675 -
Cma09g00558 674 PANTHER NISCHARIN RELATED 3 656 - -
Cma09g00558 674 ProSiteProfiles Leucine-rich repeat profile. 460 481 IPR001611 GO:0005515
Cma09g00558 674 SMART LRR_typ_2 525 546 IPR003591 -
Cma09g00558 674 SMART LRR_typ_2 436 459 IPR003591 -
Cma09g00558 674 SMART LRR_typ_2 480 503 IPR003591 -
Cma09g00558 674 SMART LRR_sd22_2 458 479 - -
Cma09g00558 674 SMART LRR_sd22_2 503 524 - -
Cma09g00558 674 SMART LRR_sd22_2 480 502 - -
Cma09g00558 674 SMART LRR_sd22_2 525 546 - -
Cma09g00558 674 MobiDBLite consensus disorder prediction 301 321 - -
Cma09g00558 674 ProSiteProfiles Leucine-rich repeat profile. 505 526 IPR001611 GO:0005515
Cma09g00558 674 Gene3D Ribonuclease Inhibitor 397 501 IPR032675 -
Cma09g00558 674 ProSiteProfiles Leucine-rich repeat profile. 482 504 IPR001611 GO:0005515
Cma09g00558 674 MobiDBLite consensus disorder prediction 612 674 - -
Cma09g00558 674 ProSiteProfiles Leucine-rich repeat profile. 527 548 IPR001611 GO:0005515
Cma09g00558 674 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 656 - -
Cma09g00558 674 SUPERFAMILY Outer arm dynein light chain 1 427 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00558 - - - cmos:111443155 1202.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01609 Cma09g00558 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00558 Cma-Chr9:2537917 Cma19g00950 Cma-Chr19:8429001 2.77E-68 dispersed
Cma01g01609 Cma-Chr1:11079981 Cma09g00558 Cma-Chr9:2537917 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00558 Cma_Chr09 FPKM 1.43427 1.930119 3.11996 3.323771 0.756654 0.899811 0.856867 16.465416 14.114747 13.981426