Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00559 ATGTCCAGTTTAATCAGCAAAAGCAACCAAATCAAAATTCTGATGGCTTGGCGCCTTCTCGTCACCAACCTAAAATCCCCTGAAACCCTAACCCTAACAAACTCCCTCCGCCATTCCTCTGCTTCCTTCTTCAACCAGAAACTCCCATTTTCCACCTCCTTCCTCATCACCAAGCTCCCCAAGAAGTTCAGGAAGAAACGCAAGAAGCAAGAAAGCCCTAGAACCAAGCTTGTCCAATCCGAACCTAATCGCATTTCTTACTTCGAGCGCATCGTTGAAACAGATTCCTTCTTCAGATTCCTTTTTAAATCGAAGGATTTCCTTTCAAAGCAGCCGGAGCACGTTCTTCGCCTCGACGATGCCGGTAAGCTCTATCGCGAACTCGGCTTCCCGAGAGGACGCAAGGTCGCTCGATCTATTGAGCGCCATCCGCTCATGTTCGAACCCTACCGTCACGTGGATGGGAAAATGTGGTTTGGATTTACCGAGTTTATGGAGAGGTTGATCGAGGAAGAGAAGAGGATTATGGACTCGATGGAGATGGATAGGGTTAGAACTGTGAGGAAGTTGTTGATGATGTCGGCGAATAAGCGAATTCCATTGTCGAAAATCTATCACTGCAGATCGGTGTTTGGGATTCCAGAGGATTTTAGAGATCGAGTGGGGAAATATCCGGATTTCTTCAGAGTTGTGGTGGAAGATGATGGGAAGAGGGTGCTGGAATTGGTCAATTGGGATCCTCTACTGGCTGTTAGTGAGCTCGAGAGAGAGTTCGTGGTGAACGAAGATAAGGCGAAAAGGGCGTTCAAGTTTCCTGTGAAACATGGGAAGGATTTGGATTTGGATGAGGATGATACGAGGAAGCTGAATTTGTTGAATACACTTCCATTGGTTTCGCCATATTCGGACGGATCGAAGCTGGAACTTTGGACATTGGAAGCAGAGAAGTACAGGGTTGGCGTGGTGCATGAGTTCTTGAGCTTGACATTGGAGAAGAAGGCTTCTATTCATCATATTGTGGAGTTTAAGGAGGAGTTCAGCTTGACTAAGCACACTTATCAGATGCTTCTGAAGCAACCCAGAACCTTTTATCTGGCTGGGACGGAAATGAATTGGGTTGTTTTTTTGAAGGATGCATACAATGAAAATGGCGACTTGATTGAGAAGGATCCTCAAGTTGTTTTCAACGAGAAGCTGCGTAGATATGCTCAAATGCAGAAGATGGAATGA 1230 45.93 MSSLISKSNQIKILMAWRLLVTNLKSPETLTLTNSLRHSSASFFNQKLPFSTSFLITKLPKKFRKKRKKQESPRTKLVQSEPNRISYFERIVETDSFFRFLFKSKDFLSKQPEHVLRLDDAGKLYRELGFPRGRKVARSIERHPLMFEPYRHVDGKMWFGFTEFMERLIEEEKRIMDSMEMDRVRTVRKLLMMSANKRIPLSKIYHCRSVFGIPEDFRDRVGKYPDFFRVVVEDDGKRVLELVNWDPLLAVSELEREFVVNEDKAKRAFKFPVKHGKDLDLDEDDTRKLNLLNTLPLVSPYSDGSKLELWTLEAEKYRVGVVHEFLSLTLEKKASIHHIVEFKEEFSLTKHTYQMLLKQPRTFYLAGTEMNWVVFLKDAYNENGDLIEKDPQVVFNEKLRRYAQMQKME 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2540880 2542109 - CmaCh09G005590.1 Cma09g00559 300564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00559 409 Pfam Plant organelle RNA recognition domain 84 407 IPR021099 GO:0003723
Cma09g00559 409 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 15 409 IPR045040 GO:0003723
Cma09g00559 409 PANTHER OS09G0473400 PROTEIN 15 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00559 - - - mcha:111004979 707.983
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01640 Cma09g00559 CCT
Cma05g00350 Cma09g00559 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00559 Cma-Chr9:2540880 Cma17g00564 Cma-Chr17:4602049 1.60E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g183 Blo01g01434 . Bda01g00646 . . Bpe02g00517 . Bma01g02187 . . . . Car09g00491 . . . Cpe06g00269 . . . . . . . . . . . . . . . . . . . . Chy04g00252 . . Blo18g00244 . . . . Bma01g00900 . . . Cmo09g00550 Cma09g00559 . . . . . . . . . . . . . . . . . . . . . . Cme04g00282
Vvi4g573 . Blo12g01052 Bda01g00663 Bda03g00098 Bpe02g01262 Bpe02g00536 Bma04g00091 Bma01g02174 Cmo05g00354 . Cma01g01640 Cma05g00350 Car09g00361 . Sed07g1964 . Cpe06g00296 Bhi04g00047 Tan02g2761 Cmetu03g1346 . Hepe10g0217 . Lcy13g1832 Cla05g01681 Cam05g1796 Cec05g1805 Cco05g1864 Clacu05g1783 Cmu05g1669 Cre05g1798 . . Cone17ag0983 Cone20ag0323 Lsi04g01336 . . Cme03g01578 Blo17g00003 . Bda01g01013 . Bpe14g00600 Bpe04g00082 Bma01g01263 . . Cmo01g01713 Cmo09g00416 Cma09g00559 . Car01g01279 Car05g00295 Cpe11g00295 Cpe02g00325 Bhi09g02433 . . . . . . Cla08g01366 Cam08g1835 Cec08g1413 Cco08g1543 Clacu08g1530 . Cre08g1314 Lsi08g01248 . Chy03g01084 Cme07g00120
Vvi18g416 . Blo12g00707 . . . Bpe04g00444 . . . . . Cma09g00559 . . . Cpe06g00425 . . . . . . . . . . . . . . . . . Cone17ag1214 Cone20ag0511 Lsi04g02237 Csa03g04448 Chy04g00252 . . . . Bda01g01362 Bpe02g01574 . Bma01g00900 . Sed13g2135 . Cmo09g00550 . . . Car09g00491 . . Bhi09g02439 Tan01g3791 Cmetu04g2115 . Hepe01g2130 . . Cla11g01384 Cam11g1442 Cec11g1468 Cco11g1464 Clacu11g1599 Cmu11g1418 Cre11g1838 . . . Cme04g00282
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013016 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00559 Cma_Chr09 FPKM 5.130895 4.520023 6.687743 5.725295 7.577044 8.945984 10.15863 9.965288 8.560295 9.117206