Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00565 ATGCAACCTGAAGACTCGAAATCCCCAGAATTTCCAATCCCTCCGCCCAATTTCCGTGCTCCGACTCATCGTCCTACTCCGGCGGCCAGTATTCCGGTCGATGTCCGTCCTAGCCAGTCCATGATTCTTTCTCCGGTCCCTCAGCCCCAAAGAGTCTCTGTCGTCTCTCCCCCTTACCATTTCCAAGTTCCTTCCAAAAGAATTCGTTCTCCCGATGATCTCCGCCACTTCCACGATTCCGATTCCGGAAGAAATTTTATTGGTTTTATTGTCGCTCTGTCTGAATCCACTCGAGGCCGGAAAATTTCAGATCCGTGTTACGCATCTGATACCGTTAATTCCATCGTCTCGATTCTTGATACTCTGATTCAGTGGGTCGATGATATACCACCGGCGCGTATGGCGTCTCGATATGGAAACCTTTCTTATCGGACATGGCATGCGCGGATGGTGGAAAACAGTGATTCTCTTATGCTTCGATTTCTCCCCGAGGATCTTCATTCAGCCACAGTGGAACTTGTACCTTATTTCACTGATAGCTTCGGGAATTCGACCCGAATCGACTATGGTACTGGGCACGAGACACAATTCGCAGCCTGGCTGTATTGCTTGGCGAAATTGGGGACAATCAAAGAGGAGGATTACCCTGCTGTCGTCGTTAGGGTTTTCGTGAAGTACCTCGAGTTAATGAGGAAATTGCAGTTGGTGTACTGTTTGGAGCCTGCGGGTTCCCATGGTGTTTGGGGCCTTGATGACTACCATTTCTTGTCGTTCGTTTTCGGATCATCACAGTTGATAGATCATAAGTATCTGAAACCTAAATCCATTCACACTCAGAATATTCTAGACAGTTTTTCAAATGAGTATCTTTACTTCTCGTGTATTTCGTTCATAAAGAAGGTGAAGAAGGGTCCATTCTCAGAACATTCGCCATTGCTTGATGATATTAGCGGGGTGCCTACTTGGAACAAGGTTAATAGTGGGTTGCTGAAGATGTACAAGGTGGAAGTATTGGAGAAAGTTCCCATTATGCAGCACTTTCTCTTTGGATGGCTCATCAAATGGAACTAG 1071 46.5 MQPEDSKSPEFPIPPPNFRAPTHRPTPAASIPVDVRPSQSMILSPVPQPQRVSVVSPPYHFQVPSKRIRSPDDLRHFHDSDSGRNFIGFIVALSESTRGRKISDPCYASDTVNSIVSILDTLIQWVDDIPPARMASRYGNLSYRTWHARMVENSDSLMLRFLPEDLHSATVELVPYFTDSFGNSTRIDYGTGHETQFAAWLYCLAKLGTIKEEDYPAVVVRVFVKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLSFVFGSSQLIDHKYLKPKSIHTQNILDSFSNEYLYFSCISFIKKVKKGPFSEHSPLLDDISGVPTWNKVNSGLLKMYKVEVLEKVPIMQHFLFGWLIKWN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2564998 2568719 + CmaCh09G005650.1 Cma09g00565 300570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00565 356 PIRSF PTPA 52 356 IPR004327 GO:0019211
Cma09g00565 356 SUPERFAMILY PTPA-like 56 355 IPR037218 GO:0019211
Cma09g00565 356 MobiDBLite consensus disorder prediction 1 30 - -
Cma09g00565 356 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 41 356 IPR004327 GO:0019211
Cma09g00565 356 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A ACTIVATOR 41 356 - -
Cma09g00565 356 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 64 355 IPR004327 GO:0019211
Cma09g00565 356 CDD PTPA 86 350 IPR004327 GO:0019211
Cma09g00565 356 Gene3D - 250 356 IPR043170 -
Cma09g00565 356 MobiDBLite consensus disorder prediction 8 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00565 K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator - zju:107420767 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01613 Cma-Chr1:11105917 Cma09g00565 Cma-Chr9:2564998 1.42E-27 transposed
Cma01g01612 Cma-Chr1:11103533 Cma09g00565 Cma-Chr9:2564998 7.13E-08 wgd
Cma05g00504 Cma-Chr5:2401008 Cma09g00565 Cma-Chr9:2564998 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g425 . . . . . . . . Cmo05g00531 . . Cma09g00565 . . . Cpe06g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00554 . . Car05g00454 . Cpe11g00444 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003204 2 3 1 1 1 1 1 2 2 1 1 2 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 3 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00565 Cma_Chr09 FPKM 8.818925 9.838149 21.790642 22.394299 8.571515 7.045072 7.663624 13.632029 14.639173 14.665704