Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00568 ATGGCGGTCGCCTCTTCCCCTCGCGAGGAGTATGTTTACCTTGCTAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTTATGGAAAAGGTCTCCGCCGCCGTAGACAACGAGGAGCTTACCGTCGAGGAGCGGAACCTTCTCTCTGTTGCTTACAAGAATGTTATTGGAGCGCGTAGAGCTTCCTGGAGGATTATTTCCTCCATTGAGCAGAAGGAGGAGAGCCGAGGGAACGATGATCATGTCTCGATCATCCGAGATTACAGATCCAAGATCGAGACTGAGCTGTCTAACATCTGCGATGGGATCCTTAATCTTCTTGACTCGCGCCTTATTCCCTCCGCTGCGTCCGGAGACTCCAAGGTGTTTTATCTCAAAATGAAGGGCGATTATCATAGATACCTGGCTGAATTCAAGACCGGAGCCAAGCGGAAGGAATCTGCCGAAAGTACCCTCACTGCTTATAAATCTGCTCAGGATATTGCAAATGCTGAACTTTCTCCTACTCACCCCATACGACTTGGGCTGGCTTTGAATTTCTCAGTGTTCTACTATGAGATTCTGAATTCCCCTGATCGGGCATGCAGCCTTGCTAAACAGGCTTTCGACGAGGCAATTGCTGAGTTGGATACATTGGGCGAGGAATCATACAAAGATAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACCCTATGGACTTCGGACATGCAGGATGATGGAGATGACATCAAAGAAGCAGCTCCCAAACGCGATGACGAATAG 777 49.55 MAVASSPREEYVYLAKLAEQAERYEEMVEFMEKVSAAVDNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSIIRDYRSKIETELSNICDGILNLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAKRKESAESTLTAYKSAQDIANAELSPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDDIKEAAPKRDDE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2573521 2579130 + CmaCh09G005680.1 Cma09g00568 300573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00568 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cma09g00568 258 Pfam 14-3-3 protein 14 238 IPR023410 -
Cma09g00568 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cma09g00568 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Cma09g00568 258 PANTHER 14-3-3 PROTEIN 4 253 IPR000308 -
Cma09g00568 258 SMART 1433_4 8 250 IPR023410 -
Cma09g00568 258 Coils Coil 14 34 - -
Cma09g00568 258 PIRSF 14-3-3 2 250 IPR000308 -
Cma09g00568 258 Gene3D - 1 252 IPR036815 -
Cma09g00568 258 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 4 253 - -
Cma09g00568 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cma09g00568 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cma09g00568 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cma09g00568 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cma09g00568 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cma09g00568 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00507 Cma09g00568 CCT
Cma09g00568 Cma12g00167 CCT
Cma01g01616 Cma09g00568 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00568 Cma-Chr9:2573521 Cma14g01134 Cma-Chr14:8781087 2.18E-160 dispersed
Cma01g01616 Cma-Chr1:11112714 Cma09g00568 Cma-Chr9:2573521 0 wgd
Cma12g00167 Cma-Chr12:742588 Cma09g00568 Cma-Chr9:2573521 6.07E-176 wgd
Cma05g00507 Cma-Chr5:2430586 Cma09g00568 Cma-Chr9:2573521 1.38E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00568 K06630 - csv:101210822 483.026