Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00573 ATGGCGCTACGTTTCGAGATCATGGGAAGATTTAATCGTGCACGTGCTGCACAACTCACTCTCCCCCACTTTACCTGCCAAACACCCCTGTTTATGCCAGTGGGAACACAAGGGACAATTAAAGGGTTGACAACTCAGCAGCTTGAAGAGATTGGTTGCCAAATTATACTTGGAAATACATATCATTTAGCACTTCGTCCTACTTCCGAGCTTATTGATGAACTGGGAGGTCTCCATAAGTTTATGAACTGGCCCAGAGCAATGCTTACTGATTCTGGCGGGTTTCAAATGGTTTCATTGTTGCATTTAGCTGATATCACCGAAAAAGGTGTAACATTTCAGTCTCCAGTTGATGGGAAGCCAATGCTTTTGACTCCTGAGGAATCAATTCAAATTCAAAACAGAATTGGAGCAGATATTATTATGGCTCTTGATGATGTAGTAAGAACAACCATTACAGGTCCAAGAATTGAGGAGGCCATGTACCGTACTCTTCGGTGGATAGACAGATGTATAGCAGCACATAAGAGGCCTCATGAGCAGAATTTATTTGGCATTGTGCAAGGTGGATTGGATCCAGTCCTAAGGGACATATGCGTCAGAGGCTTGGTTGACCGAAATTTACCAGGGTATGCAATTGGCGGTCTGGCAGGTGGTGAAGATAAAGATTCATTTTGGCGTGTTGTTGCTCAATGTACTGCTTCACTGCCCGAGGACAAACCTAGATATGTTATGGGTGTCGGTTATCCATTGGACATTGTAGTATGTAGTGCGTTAGGTGCCGACATGTATGACTGTGTTTATCCAACCCGTACTGCTCGTTTTGGCACAGCGCTCATACCTGAGGGAGTTTTAAAACTAAAACACCAAGTGATGGCTGATGATACCCGTCCCATTGATCCTACATGCGATTGCATGGTCTGCAGGAACTATACTAGGGCCTACATTCATTGTCTTGTTACAAAATATGCTATGGGTTCTCAGCTACTCTCATATCACAATTTATATTACATGATGAAGCTTAGCAGAGATCTACATTCTTCAATTGTTCAGGGGCAATTCCCAGAGTTCGTTCGCAAATTCTTGCAGAGAATGTTTCCTCAGGGTGACGTGCCGCAATGGGTCTGCAATGCTATGGAGGTTGCCGGTATCGACATCTCTTCCTGTTGTGCTCCTTTCACTACAAGAAATACTGTTTTTAGCGACGAAATTTCGTCGCTAAAGCCACAGAATAGTTGCAAAAATCCTTCAGCGACGTAA 1260 43.81 MALRFEIMGRFNRARAAQLTLPHFTCQTPLFMPVGTQGTIKGLTTQQLEEIGCQIILGNTYHLALRPTSELIDELGGLHKFMNWPRAMLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVRTTITGPRIEEAMYRTLRWIDRCIAAHKRPHEQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHQVMADDTRPIDPTCDCMVCRNYTRAYIHCLVTKYAMGSQLLSYHNLYYMMKLSRDLHSSIVQGQFPEFVRKFLQRMFPQGDVPQWVCNAMEVAGIDISSCCAPFTTRNTVFSDEISSLKPQNSCKNPSAT 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2606729 2614105 - CmaCh09G005730.1 Cma09g00573 300578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00573 419 Gene3D - 1 367 IPR036511 GO:0006400|GO:0016763
Cma09g00573 419 TIGRFAM Q_tRNA_tgt: tRNA-guanine transglycosylase 5 365 IPR004803 GO:0008479|GO:0101030
Cma09g00573 419 Hamap Queuine tRNA-ribosyltransferase [tgt]. 3 364 IPR004803 GO:0008479|GO:0101030
Cma09g00573 419 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 1 389 - -
Cma09g00573 419 SUPERFAMILY tRNA-guanine transglycosylase 1 364 IPR036511 GO:0006400|GO:0016763
Cma09g00573 419 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 5 365 IPR002616 GO:0006400|GO:0016763
Cma09g00573 419 Pfam Queuine tRNA-ribosyltransferase 13 365 IPR002616 GO:0006400|GO:0016763
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00573 K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit [EC:2.4.2.64] - csv:101206917 793.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00573 Cma-Chr9:2606729 Cma04g03031 Cma-Chr4:19780914 1.84E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g450 . Blo12g00713 . Bda03g00481 . Bpe04g00435 Bma04g00448 . . . . Cma09g00573 . . . Cpe06g00437 . . . . . . . . . . . . . . . Cone4ag1321 . . . Lsi04g02253 Csa03g04464 Chy04g00237 . . . . Bda01g01336 . . . . Sed14g0067 . Cmo09g00560 . . . Car09g00502 . . Bhi09g02464 Tan01g3814 Cmetu04g2961 . Hepe01g2146 Mch11g0684 . Cla11g01400 Cam11g1456 . . Clacu11g1617 Cmu11g1434 . . . . Cme04g00265
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005915 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 6 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00573 Cma_Chr09 FPKM 0.924198 1.310544 0.965793 0.596231 3.428023 3.754915 3.453277 1.213295 0.920323 0.75219