Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00580 ATGGATCTTCCTTCGGAAGTTGAGAATTACATCAAGGAAACAATAGATCATGCATTAGGTCTCCCTGTGTCAGTGGAGACGCTGGAGTTGAAGCTTCGTGTCTCTCAGGATTCTCAGAGGCGACTTGCTCATCATTGCGATGCTCTACAGTCCAAAATCAAAGAGAAAGAACAGTTGATTGAGCGCAGTAGGGCTGAAGCGACAATGAACGCTCAAGCTTTGAAGAAATTTGTGGATGAGAACCGTAAACTGGCTACCGAATGCTTATATCTTTCGGGTCAATGTGAGAAATGGGAGAGAGAGTGCTCTTTATATGATCATGACCGAGATGCATTGATGGAGTTCGGGAACGAGGCTGATCAGCGTGCAAGGGAGGCTGAGAATCGTGTTCGTGAATTGGAGGAGGAGGTTAGACGGTTATCAGATGAACTGCAGTTCTTTAAACATGAACACGAGATGAAAAAGCCTTCAACTCAAAAGACTCTATCACTAGCTGCATATGTGAAGGCCGTCGAGAAGGATTGCGAACATCTGAGGGTGAAATTGTTGTATGAAGATAATATGCTTCTTGACAAGGAGAACAAGAAGTTGCTGAAACGGTACCAGGAAGATAAAACCCAACATTCAGGTGATAAGCAGGCCAACAGTGAGTCTGCCGCCAAGAATCTGGTGTTTATCGCGCCTCTCTCATGTCTGCAAAATCCATCTTATTCCAACAATGGCGATATCAAACTCTCTCTTTCGCGCTCTTCTTCCTCGCTTTTTTCTACTCCCCTCGGCCACAATCCTTTAACTTCCATTAGGGCTAAGAGAACCAGAAAGTTTGTTTTCCAGTTGGCCTCGACCTCCCAAGACGATGCGATAGCGAGCTCTTCTTCTGATGCTGAGGAGTTTTCTCGAACCAGATTGCTTGCTCAGAACGTGCCTTGGGATTCTACTCCTGAGGATATTCGTTCTTTGTTTGAGAAATATGGTACTGTCGTAGACGTGGAGCTTTCAATGTATAACAAGATCAGAAATAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCCCTTGCGGCAGTTAATAATCTCGAATCGTATGAATTTGGGGGTCGTACCCTGAAGCTCAATTATGCTAAGGTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCAAACCCCGTTACTTTTAATTTGTTTGTTGCAAATTTGCCATTTGATGCAAGAGCAAAGGACCTCAGGGAGTTCTTCGATTCGGGGAGTGGGAATGTAGTTTCTGCACAAATTATTTTTCACGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCATTCAAAACAAAGAAGGATGCCGAAGCAGCTATTTCTGAGTTTCAAGGGAAGAATTTCATGGGAAGATCACTTCGTGTTGCACGTAGTAAACAGTTTGTGAAACTTCCCTCAGAAGAGAATTCCCAATCTGACGATACATCAACTGATGGTGTGGAGCTAGCCAGTGCTGCTGCTGAAGTAAGAAAACGAGCTAAATCAGGATTAGTCGGCAAGTTTTCTAGTTGGGACAGTGACAATCTGTCAATAAGTTCTTGGCTTGACATTTTAATTCCTCCTCATTCTTAG 1611 44.13 MDLPSEVENYIKETIDHALGLPVSVETLELKLRVSQDSQRRLAHHCDALQSKIKEKEQLIERSRAEATMNAQALKKFVDENRKLATECLYLSGQCEKWERECSLYDHDRDALMEFGNEADQRAREAENRVRELEEEVRRLSDELQFFKHEHEMKKPSTQKTLSLAAYVKAVEKDCEHLRVKLLYEDNMLLDKENKKLLKRYQEDKTQHSGDKQANSESAAKNLVFIAPLSCLQNPSYSNNGDIKLSLSRSSSSLFSTPLGHNPLTSIRAKRTRKFVFQLASTSQDDAIASSSSDAEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLNYAKVKKEKPSPPVKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEENSQSDDTSTDGVELASAAAEVRKRAKSGLVGKFSSWDSDNLSISSWLDILIPPHS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2655147 2663238 - CmaCh09G005800.1 Cma09g00580 300585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00580 536 Coils Coil 116 150 - -
Cma09g00580 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 394 473 IPR000504 GO:0003723
Cma09g00580 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 378 IPR000504 GO:0003723
Cma09g00580 536 SUPERFAMILY Tropomyosin 49 153 - -
Cma09g00580 536 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 243 492 - -
Cma09g00580 536 Gene3D - 270 382 IPR012677 -
Cma09g00580 536 SMART rrm1_1 395 469 IPR000504 GO:0003723
Cma09g00580 536 SMART rrm1_1 302 374 IPR000504 GO:0003723
Cma09g00580 536 Coils Coil 46 66 - -
Cma09g00580 536 Gene3D - 37 163 - -
Cma09g00580 536 Gene3D - 383 506 IPR012677 -
Cma09g00580 536 PANTHER OS08G0483200 PROTEIN 243 492 - -
Cma09g00580 536 SUPERFAMILY RNA-binding domain, RBD 301 469 IPR035979 GO:0003676
Cma09g00580 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 396 467 IPR000504 GO:0003723
Cma09g00580 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 372 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00580 - - - csv:101208444 433.721
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01629 Cma09g00580 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00580 Cma-Chr9:2655147 Cma14g00366 Cma-Chr14:1659030 1.98E-23 dispersed
Cma16g01171 Cma-Chr16:8970857 Cma09g00580 Cma-Chr9:2655147 2.84E-39 transposed
Cma01g01629 Cma-Chr1:11170874 Cma09g00580 Cma-Chr9:2655147 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g455 . . . . Bpe02g00126 . . Bma01g02600 . . Cma01g01629 Cma09g00580 Car01g01238 Car12g00159 . Cpe06g00442 . Bhi04g00784 Tan02g2423 Cmetu03g0174 . Hepe10g0472 . Lcy13g1537 Cla08g01131 Cam08g1588 Cec08g1158 Cco08g1284 Clacu08g1288 . Cre08g1070 . . . . Lsi04g02260 Csa03g04471 Chy04g00230 . . . Bda11g00781 . . . . . Sed05g1576 Cmo01g01675 Cmo09g00564 . . . Car09g00509 . Cpe02g00354 Bhi09g02472 Tan01g3821 Cmetu04g1707 . Hepe01g2152 Mch11g0690 . Cla11g01405 Cam11g1462 Cec11g1490 Cco11g1486 Clacu11g1623 Cmu11g1440 Cre11g1859 . . . Cme04g00256
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00580 Cma_Chr09 FPKM 4.561952 6.91119 14.941851 14.011139 65.817528 53.542412 66.853485 9.902483 8.126655 7.963367