Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00581 ATGAGGAAGAAACGGAAAGGAAGCGAGACTGATGGACCGTTAAATTTACGAGATAATGTAACAGAATCTCATGATTCGCGATCTTCTAAACTGAAGGCTCATTACTCGTTAGAAGATTACACGAGGTTGAATAAACGATGCAAGGAAGATGTGGGTATTGAACCAGTTCCTTCATGCAAGAGTAGGTTTGCCGGCATAGCTACAGCTCCACCCAGTGGGAGTTCTTCCCTGATTCTTCCTGGTAGAGGTTTGAAGAGGAAGATCGGGTGCATCGACGTGGCTACTCAAATTGGGCGTAAACATAACATCGAAAATGATTATGTTTCAGGCGAGACGATCGGACATGGAAAATTTGGTTCAGTTTGGCTGTGTAAATGTAAGGTTAGTGGAGCTGAATATGCTTGCAAGACCTTAAAGAAAGCAGAGGAGACCGTTCATAGGGAAGTGGAGATAATGCAGCACTTATCTGGCTACCCAGGCGTTGTGACGTTGCTAGCAGTGTACGAGGAGTCCGAATGTTTTCACCTGGTTATGGAATTGTGCCGTGGAGGCCGTCTGGTTGATCAGATGGTCAGTGAAGGTCGATATTCAGAGCATCGAGCAGCTAATATACTCAAGGAAGTGATGCTGGTTATAAAGTATTGTCATGATATGGGGGTTGTACATAGAGACATAAAGCCTGAAAATATTCTTCTCACAACATCTGGAAAGATAAAGCTTGCAGATTTTGGCCTGGCGACTAGGATTTCATATGGTCAGAGTTTAATTGGTTTGGCTGGAAGCCCAGCTTATGTAGCCCCTGAAGTGTTGTCAGGAAAGTACAGTGAGAAGGTGGATATTTGGAGTGCTGGTGTGCTCCTCCATGCTCTTTTGGTTGGCGCTCTTCCTTTCCAAGGCGACTCATTAGAATCAGTTTTCGAAGCAATAAAGAACTCTAAGCTCGACTTCCACTCGGGGATGTGGGAGTCTATATCTAAACCTGCCCGCGATCTCATTGGGAGAATGCTGACAAGAGATATTTCATCTAGGATAACAGCAGAAGAAGTCTTAAGGCATCCCTGGATATTGTTTTACACCGAGCGCACGCTCAAGACTCTTCCGATCAAACTAAAACTGAAGAATCAAGAATCTTGCCAACCGTCTCCAATTTCAGCCAAAACTAAGTCTGACAGAAACAGGATTGACAGTGCAGCTAATTTGACCTCCCTTAACGAAGTCTCTGACCTTTCCTCATCTGAAAGTTGCAACGCCAATGGCGAAGATGACGAGGATTGCTTTCTGGTGGATGCCCTTGCTACAGCTATTTCACATGTGAGAATATCCGAGCCAAAGAGAAGTAGGCTGTGTGTTCCTACAGGCCCTATCGAGCAGCACAGCTCCTCTAACATGAAAGCTAACAATCTTTGTAAAGCGTTTTGA 1419 44.75 MRKKRKGSETDGPLNLRDNVTESHDSRSSKLKAHYSLEDYTRLNKRCKEDVGIEPVPSCKSRFAGIATAPPSGSSSLILPGRGLKRKIGCIDVATQIGRKHNIENDYVSGETIGHGKFGSVWLCKCKVSGAEYACKTLKKAEETVHREVEIMQHLSGYPGVVTLLAVYEESECFHLVMELCRGGRLVDQMVSEGRYSEHRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTTSGKIKLADFGLATRISYGQSLIGLAGSPAYVAPEVLSGKYSEKVDIWSAGVLLHALLVGALPFQGDSLESVFEAIKNSKLDFHSGMWESISKPARDLIGRMLTRDISSRITAEEVLRHPWILFYTERTLKTLPIKLKLKNQESCQPSPISAKTKSDRNRIDSAANLTSLNEVSDLSSSESCNANGEDDEDCFLVDALATAISHVRISEPKRSRLCVPTGPIEQHSSSNMKANNLCKAF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2675190 2678397 + CmaCh09G005810.1 Cma09g00581 300586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00581 472 Gene3D Transferase(Phosphotransferase) domain 1 98 422 - -
Cma09g00581 472 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 464 - -
Cma09g00581 472 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cma09g00581 472 CDD STKc_CAMK 106 354 - -
Cma09g00581 472 MobiDBLite consensus disorder prediction 1 28 - -
Cma09g00581 472 SUPERFAMILY Protein kinase-like (PK-like) 100 376 IPR011009 -
Cma09g00581 472 SMART serkin_6 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00581 472 Pfam Protein kinase domain 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00581 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Cma09g00581 472 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 24 464 - -
Cma09g00581 472 ProSiteProfiles Protein kinase domain profile. 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00581 - - - csv:101207957 874.389
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01477 Cma09g00581 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00581 Cma-Chr9:2675190 Cma02g01488 Cma-Chr2:8500635 2.16E-82 dispersed
Cma01g01631 Cma-Chr1:11178786 Cma09g00581 Cma-Chr9:2675190 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g473 . Blo12g00717 . Bda03g00469 Bpe02g00129 Bpe04g00431 Bma04g00444 Bma01g02597 . . Cma01g01477 Cma09g00581 Car01g01239 . . Cpe06g00444 . . . . . . . . . . . . . . . Cone4ag1314 Cone7ag1257 . . Lsi04g02263 Csa03g04473 Chy04g00228 . . . Bda11g00784 . . . . . . Cmo01g01533 Cmo09g00568 . . . Car09g00512 . Cpe02g00353 Bhi09g02475 . . . . Mch11g0692 . Cla11g01407 Cam11g1464 Cec11g1492 Cco11g1488 Clacu11g1625 Cmu11g1442 Cre11g1861 . . . Cme04g00254
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004556 3 2 1 2 2 0 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68795 PF00069 Pkinase 1.70E-68 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00581 Cma_Chr09 FPKM 12.781493 13.950552 21.597879 21.643469 15.821778 15.708012 15.22961 16.647261 18.130636 18.612354