Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00592 ATGTTCCCAAAGCCCCACCACCAACCACCGTCCCATTCTCATCCTTTTCCTCGTTCCTTCCCCGTCGCCGCAACTCCACCACCGCGCGGTTCTCCCTCCTCCGTCGATGAGGCTTCCGCGGCCGGCCCTTCGCCTCTCACTCACACCATGTTCCCTAAAGAATCGGCATCCGCCGGCGATGGAGCTTCCATAGAAGTCGTCCGCCGCCCCCGAGGTCGTCCGCCGGGATCCAAGAACAAGCCGAAGCCGGCGGCCGTTGTCGTCGCCGGCCGCGAGGCTGAGCTGGCGATGAGTCCTTATGTACTTGAAGTCCCCGGTGGTAGCGATATTGTCGAGGCTGTTGCCCGATATTGCCGCTGCCGAAACACAGGGCTTTGTGTTCTCAACGCTTATGGAACCATCGCTGACGTCACTCTCCGGCAGCCGCCTTCGTCTCCTGTGGCGACCGTCACTTTCCGTGGACGATTCGATATCCTTTCCGTCTGCGCTACTTTCGTTCCTCAAACGACTTCGTTTCCTATACCTAACGGATTCACCATCACGCTAGCGGGACCACAGGGCCAGATCTTCGGCGGCTTGGTCGCCGGATCTTTAATCAGCGCCGGAACCGTCTATGTAATAGCCGCCTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCCGAGGACGAGGTCAAGAAATTAACCTTCAGCGACGTGGAAGAAGGCCACTCTCCGATCTCCGGCAACAAAGACAGCGAAAGCACCGCCCCTACCGAAACCTGTGGTCTTCTCCCGATGTACAGCACTCACTCATCATCGGACGTAATATGGACGCCGGCCGCCAGACAACCGGCTCCGCCGCACCATCGCCATTACTAA 861 58.77 MFPKPHHQPPSHSHPFPRSFPVAATPPPRGSPSSVDEASAAGPSPLTHTMFPKESASAGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAELAMSPYVLEVPGGSDIVEAVARYCRCRNTGLCVLNAYGTIADVTLRQPPSSPVATVTFRGRFDILSVCATFVPQTTSFPIPNGFTITLAGPQGQIFGGLVAGSLISAGTVYVIAASFNNPSYQRLPSEDEVKKLTFSDVEEGHSPISGNKDSESTAPTETCGLLPMYSTHSSSDVIWTPAARQPAPPHHRHY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2739782 2740642 - CmaCh09G005920.1 Cma09g00592 300597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00592 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Cma09g00592 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 10 281 - -
Cma09g00592 286 MobiDBLite consensus disorder prediction 1 84 - -
Cma09g00592 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cma09g00592 286 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cma09g00592 286 MobiDBLite consensus disorder prediction 1 28 - -
Cma09g00592 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 281 IPR014476 GO:0003680
Cma09g00592 286 MobiDBLite consensus disorder prediction 233 253 - -
Cma09g00592 286 Gene3D - 98 237 - -
Cma09g00592 286 CDD DUF296 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00550 Cma-Chr5:2687553 Cma09g00592 Cma-Chr9:2739782 1.11E-89 dispersed
Cma09g00592 Cma-Chr9:2739782 Cma15g00103 Cma-Chr15:479122 1.19E-42 dispersed
Cma01g01644 Cma-Chr1:11260554 Cma09g00592 Cma-Chr9:2739782 5.48E-166 wgd
Cma12g00196 Cma-Chr12:911548 Cma09g00592 Cma-Chr9:2739782 1.00E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00592 - - zju:107421268 290.041