Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00593 ATGGATTGCTTGACCTCCTACTTTTTACCCGCCACATTAGCCTTCTCTAAGTCCTCCGTTTCAGCTTCTAAGCTGCCATTTTTCGCCGTCGCTCGTGGAGCCTTGCCGGTGTTTGGTGTTCTCAGAGCCTCTCGTACCGCCGATGCGCCGCTGTCCGTCGACGATTGGCCGGAAAATCGCTCTGATAAGGAGGTTAAACTTTGGGGCGGTCGTTTCGAGGAGAGCGTCACCGATGCGGTTGAGCGATTTACCGAATCGATCTCCTACGATAAGCAGCTTTACAAGCACGATATTAGAGGGAGTCGAGCTCATGCTTCAATGCTAGCTAATCAGGGATTGATGAGTGTTGCTGAAAGGGACAGTATCATTGAAGGTTTGGATGAAATTGAGAGGCGAATTGAAAGTGGTGATTTTGTTTGGAGAACAGATAGGGAGGATGTTCATATGAACATTGAGGCTGCCTTGATTGATATGATTGGTGAACCTGCGAAGAAGCTACATACTGCTCGAAGCCGCAACGATCAAGTTCTAACTGATTTTCGATTGTGGTGCCGGGATGCAATTGATGCTATATTAGATGCTATTAGGTACCTTCAAGTTTCCATGGTAACTCTGGCATTGAAGAACGAGGGATTAATCGTTCCGGGCTACACTCATTTACAAAGAGCGCAACCGGTTCTACTTCAGCATCTTCTCTTAGCCTTTGTTGAGCAGCTTGAAAGAGATGCTGGTCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTTTGCCCGCTAGGTGCATGTGCGCTGGCTGGCACTGGCCTACCTATTGATCGTTTTATGACTGCTGAGGCTTTAGGGTTCACCGCTCCCTTGAGAAATAGTATCGATGCAGTTTCAGATCGAGATTTTGCCTTGGAATTTCTTTCTGCCAATGCCATCACCGCCATCCATCTTTCAAGGCTAGGAGAAGAATGGGTGTTGTGGGCTTCCGAAGAGTTCGGATTCATAACACCCAATGATTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCCGATCCGATGGAACTTGTTCGTGGGAAGTCAGCTAGAGTCATAGGAGACTTGGTTACCACTCTCACTTTATGCAAAGGTCTGCCTCTGGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTCGACAGCGTAAAAACAATATTGGGGATGCTCGAAGTGTCAGCTGAGTTTGCTCAGAATATTTCGTTCAATCGGGAGAGAATTGAAAAGGCTTTACCTGCTGGTTATCTCGACGCCACAACACTTGCCGATTACCTCGTGAAGAAGGAGCTGCCTGTGTTGCTACTCAAATCGAATACTGGGTTAATAAACTCCAAATCAATCTGTAGATCTGGTTTGCAAGCCATCTGGAAATGGCTGTTTTCAAGTCAAAGATCCTGCAGTGCAAGCATTCTGGGGTCACAGGTTGAAGCAGAACGCTTGCTTGGAATCGCTGAGAAACTCTTGCACAACCGTGATTTCACAGGCTCCAAAGATTTCGCCATCTTAGCTCAAGAAACAATGCCTCTTTTGGATGGCTCCGATCAGATCTTAGCGGTTGCGGATGTGTTATTGGCGTCGGAGAAGCGAATCAACAACCACAATGATTGGTATTCGATTCTTCAGGTTGAACGGCAATCTGATGATTCGGATCTCATCAAGAGGCAGTATCGGAGACTCGCGATACTTCTACATCCCGACAAGAACAAATTTCCTTACGCTGATCAAGCTTTCAAGCTGGTTGCAGATTCGTGGGCTGTATTGTCCGACCACTCGAAGAAATCACTCTACGATAACGAGCTCAGTCTCTCTGCTAAGATCGATTTGTCCCAGCAGAACAAATTTCCGGTGCGCCGAAGCCAACGATCCAGTTGGAAGAAAGAGCACGAGTTTGAGAGTAACGATGGCGCCAACGCCGATCAATCTCCAAATCAGCGGGTGAAAGTATCGAGTTTCTGGACCGCTTGCCCTTACTGTTACGTGTTATTGGAATATCCTAGGGTTTATGAGGGTTGCTGTTTGCGGTGTCAGAATTGCAAGAGGGCATTTCAGGCGGTGTTGCTTCCGTCTCTTCCGCCGCTCGTTCAGGGCCAGGAAGCCTACTATTGCTGCTGGGGTTTCTTTCCGATGGGGTTTGCCGCTCAAATTCCCGAGAAAGGTGGGAAGGGTGGCGAAACAGCGGCACCTGCGACAGCGTTCCCCAATTGGATGCCCCCAATATTCTCTAACAGGCCGCAAGAAACTAGTGGGAATGGAAAAACTGCGGCGGCGGAGAAGACGGTGACAGGTAGTGAAAGAGCGGCGGTGGTTGCTAGGACTCCGATTGTGAGTGACACTGGCACAGGGAAGAAGAGGGGTAGGCCGCGGAAACCGCCGATTGCAGCCTAA 2421 48.41 MDCLTSYFLPATLAFSKSSVSASKLPFFAVARGALPVFGVLRASRTADAPLSVDDWPENRSDKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHASMLANQGLMSVAERDSIIEGLDEIERRIESGDFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDAILDAIRYLQVSMVTLALKNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLSDCRVRLNLCPLGACALAGTGLPIDRFMTAEALGFTAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNRERIEKALPAGYLDATTLADYLVKKELPVLLLKSNTGLINSKSICRSGLQAIWKWLFSSQRSCSASILGSQVEAERLLGIAEKLLHNRDFTGSKDFAILAQETMPLLDGSDQILAVADVLLASEKRINNHNDWYSILQVERQSDDSDLIKRQYRRLAILLHPDKNKFPYADQAFKLVADSWAVLSDHSKKSLYDNELSLSAKIDLSQQNKFPVRRSQRSSWKKEHEFESNDGANADQSPNQRVKVSSFWTACPYCYVLLEYPRVYEGCCLRCQNCKRAFQAVLLPSLPPLVQGQEAYYCCWGFFPMGFAAQIPEKGGKGGETAAPATAFPNWMPPIFSNRPQETSGNGKTAAAEKTVTGSERAAVVARTPIVSDTGTGKKRGRPRKPPIAA 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2744449 2750733 - CmaCh09G005930.1 Cma09g00593 300598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00593 806 SMART dnaj_3 546 604 IPR001623 -
Cma09g00593 806 ProSiteProfiles dnaJ domain profile. 547 612 IPR001623 -
Cma09g00593 806 SUPERFAMILY L-aspartase-like 67 443 IPR008948 GO:0003824
Cma09g00593 806 MobiDBLite consensus disorder prediction 754 806 - -
Cma09g00593 806 PRINTS Fumarate lyase superfamily signature 339 355 IPR000362 -
Cma09g00593 806 PRINTS Fumarate lyase superfamily signature 211 229 IPR000362 -
Cma09g00593 806 PRINTS Fumarate lyase superfamily signature 166 184 IPR000362 -
Cma09g00593 806 PRINTS Fumarate lyase superfamily signature 295 322 IPR000362 -
Cma09g00593 806 MobiDBLite consensus disorder prediction 630 654 - -
Cma09g00593 806 CDD DnaJ 547 601 IPR001623 -
Cma09g00593 806 Pfam DnaJ domain 547 609 IPR001623 -
Cma09g00593 806 Hamap Argininosuccinate lyase [argH]. 66 523 IPR009049 GO:0004056|GO:0042450
Cma09g00593 806 Gene3D - 424 443 - -
Cma09g00593 806 PANTHER ARGININOSUCCINATE LYASE 78 444 - -
Cma09g00593 806 Gene3D DnaJ domain 535 633 IPR036869 -
Cma09g00593 806 PANTHER ARGININOSUCCINATE LYASE 78 444 IPR009049 GO:0004056|GO:0042450
Cma09g00593 806 MobiDBLite consensus disorder prediction 754 769 - -
Cma09g00593 806 PRINTS Argininosuccinate lyase family signature 165 187 - -
Cma09g00593 806 PRINTS Argininosuccinate lyase family signature 339 355 - -
Cma09g00593 806 PRINTS Argininosuccinate lyase family signature 295 319 - -
Cma09g00593 806 PRINTS Argininosuccinate lyase family signature 206 226 - -
Cma09g00593 806 PRINTS Argininosuccinate lyase family signature 257 273 - -
Cma09g00593 806 PRINTS Argininosuccinate lyase family signature 374 393 - -
Cma09g00593 806 PRINTS DnaJ domain signature 584 604 IPR001623 -
Cma09g00593 806 PRINTS DnaJ domain signature 568 583 IPR001623 -
Cma09g00593 806 PRINTS DnaJ domain signature 549 567 IPR001623 -
Cma09g00593 806 SUPERFAMILY Chaperone J-domain 542 612 IPR036869 -
Cma09g00593 806 MobiDBLite consensus disorder prediction 632 646 - -
Cma09g00593 806 CDD Argininosuccinate_lyase 86 443 IPR009049 GO:0004056|GO:0042450
Cma09g00593 806 Gene3D Fumarase/aspartase (Central domain) 183 423 - -
Cma09g00593 806 ProSitePatterns Fumarate lyases signature. 339 348 IPR020557 GO:0003824
Cma09g00593 806 Gene3D - 86 293 IPR024083 -
Cma09g00593 806 ProSitePatterns Nt-dnaJ domain signature. 589 608 IPR018253 -
Cma09g00593 806 Pfam Lyase 70 364 IPR022761 -
Cma09g00593 806 TIGRFAM argH: argininosuccinate lyase 67 444 IPR009049 GO:0004056|GO:0042450
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00593 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - csv:101205167 800.431
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01645 Cma09g00593 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00543 Cma-Chr5:2639310 Cma09g00593 Cma-Chr9:2744449 0 dispersed
Cma09g00593 Cma-Chr9:2744449 Cma11g01667 Cma-Chr11:10962449 3.43E-22 dispersed
Cma14g00919 Cma-Chr14:4764763 Cma09g00593 Cma-Chr9:2744449 5.93E-06 dispersed
Cma01g01645 Cma-Chr1:11266079 Cma09g00593 Cma-Chr9:2744449 0 wgd
Cma12g00201 Cma-Chr12:950680 Cma09g00593 Cma-Chr9:2744449 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g01645 CST 3 274 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 56.8 8.8e-83 304.7
Cma09g00593 CST 488 804 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 52.1 8.8e-83 304.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020012 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00593 Cma_Chr09 FPKM 11.263955 12.413423 19.77072 21.316196 31.014183 29.755014 28.76755 31.973261 32.198967 31.37606