Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00596 ATGCCGCATAGAACGACTTACTTTTTTCCCAGGCAGTTTCCTGATCGCGGATTTGATTCGGCGTCAACCTCCAAACACATTTCGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACTGAAAGCGACGCGAAACCGACCCCGCGGCCTGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAACAAGAAACTACCTGCTTTTTACGATTGGTTGGTGGATAAGAAAGCTACGCGATCGGCAACAACTCACGTGAAAACTTGGCTTTCCAATTGCGACGAGGACCGCGAGCTCTTGCTTCCACCGCCTACCTCGGAGCCGGAGCATAATACAGCGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGGGAGTAGCTTTGCAGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGATGTCAAGGATTCATCTGCGTCCAAGATATTGTCCTCGCACACGGCGAGGCCGGAAGAGATTGAGGTTGGAGATGGTAACGAAAGCATAGCAAAGAGAGCTAAAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCCACGCTTCGTTCCCATGCTAGCCTCGCTGGCGATCCTGTGCTTCTGGAGGAAGGCAGGGTGGAAATTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTGTCTTACTCCGACAAAATATCAGACGGATTCTACAATATTTTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGCCTACCTCCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTTGATAGACGTGGGGACTCTCGCCTGAAAGAACTTGAAGACAAAGCACAAGAACTATATTGTGCTTCCGAGAGCACCTTAATGTTAGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGAACTTTTCCGGTGGAGCAAGGGGGATTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGACTTCCAGAAATGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCACCGTGCAATCCTTTTCAAGAAATTGGCAGATTATATAGGCTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAGTCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCAGGAAATGTACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCTTCAATTCCTTCACCGCTCCACATTTCTCATTTAAAGGAGTTTCAAGAACCTTATGTGGAAAGTTATCTCAGTCATCAAACCATTGAGTCGAAGCAAATCTGTGGGTTTCCTGAAAATCCTCTACTTTCAGGTCTTGGAGAGCACCAGGTGAAAGGAGGAAGCACTTTGCATAGAAGTTCAGGGGCTGAAATTCATAAAATGGTTGATCAAGCTGGTACGGGTATGAGATCATCTCAGCTGCATGCGGAAACAAAAGTGAGCAAGGAGTGTGTGCTTAAGAATCAAATAATGTCATCTGTTGATGACTCAAACTGCGAGGTGTTGGGTTCTGTTGGTGGTGCAGCTTTACGTGAAAACAAAGTTGTCATTGAAGAAATCTACCAAGAAGAGAATGTTGTTGCGGGGATTTCACTGAATGAAACTAGCATTAATCTTTCCAAATTAAGCTTGTCAACTCAAACTGATTCAAAAGAGGTTGAGGGTAGGTCTCAAAATTGTTCAGCATCAACATATCCAAAATATCTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCCTGGGACGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCATTTGGTACTGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCATGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTGAGAGAGGTTGCGATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACCGAGTATCTGCCCAGGGGTAGTCTATACCGTCTAATCCACCGGCCATCTTCTAGTGAATTGATGGATCAAAGGAAACGATTGCGTATGGCGTTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCTAACTTGTTGGTTGACAAAAATTGGACGGTCAAGGTTTGTGATTTTGGGTTATCCAGATTCAAAGCAAACACTTTCATATCATCAAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCGAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGGCTTGGCCCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAATAGAAGGCTTTCTATCCCATCAAGTACTTCTCCATTGTTGGCTTCCCTAATTGAATCTTGCTGGGCAGACGATCCTTCTCAGCGTCCATCCTTCACAAGCATAGTCGACTCCCTAAAGAAATTGCTTAAATCTCCACAGCAATTGATAGCAATGGGTGGAACGTGA 2778 45.97 MPHRTTYFFPRQFPDRGFDSASTSKHISDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSATTHVKTWLSNCDEDRELLLPPPTSEPEHNTASVKDRSVDRNFDRQVSLPRVSSGSSFAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHTARPEEIEVGDGNESIAKRAKESYYLQLALAATLRSHASLAGDPVLLEEGRVEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLRTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASESTLMLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLRDFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNVHGPDSSINGGFQSSIPSPLHISHLKEFQEPYVESYLSHQTIESKQICGFPENPLLSGLGEHQVKGGSTLHRSSGAEIHKMVDQAGTGMRSSQLHAETKVSKECVLKNQIMSSVDDSNCEVLGSVGGAALRENKVVIEEIYQEENVVAGISLNETSINLSKLSLSTQTDSKEVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTMQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSSELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSSTSPLLASLIESCWADDPSQRPSFTSIVDSLKKLLKSPQQLIAMGGT 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2765119 2773449 - CmaCh09G005960.1 Cma09g00596 300601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00596 925 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Cma09g00596 925 Pfam Protein tyrosine and serine/threonine kinase 655 909 IPR001245 GO:0004672|GO:0006468
Cma09g00596 925 SUPERFAMILY Protein kinase-like (PK-like) 629 908 IPR011009 -
Cma09g00596 925 MobiDBLite consensus disorder prediction 113 134 - -
Cma09g00596 925 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 107 923 - -
Cma09g00596 925 MobiDBLite consensus disorder prediction 19 59 - -
Cma09g00596 925 Gene3D Transferase(Phosphotransferase) domain 1 734 921 - -
Cma09g00596 925 MobiDBLite consensus disorder prediction 22 40 - -
Cma09g00596 925 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 107 923 - -
Cma09g00596 925 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Cma09g00596 925 PRINTS Tyrosine kinase catalytic domain signature 729 742 IPR001245 GO:0004672|GO:0006468
Cma09g00596 925 PRINTS Tyrosine kinase catalytic domain signature 770 788 IPR001245 GO:0004672|GO:0006468
Cma09g00596 925 PRINTS Tyrosine kinase catalytic domain signature 836 858 IPR001245 GO:0004672|GO:0006468
Cma09g00596 925 PRINTS Tyrosine kinase catalytic domain signature 880 902 IPR001245 GO:0004672|GO:0006468
Cma09g00596 925 ProSitePatterns Protein kinases ATP-binding region signature. 661 682 IPR017441 GO:0005524
Cma09g00596 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
Cma09g00596 925 CDD STKc_MAP3K-like 661 909 - -
Cma09g00596 925 ProSiteProfiles Protein kinase domain profile. 655 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00596 925 SMART serkin_6 655 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01473 Cma09g00596 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01176 Cma-Chr3:7858266 Cma09g00596 Cma-Chr9:2765119 0 dispersed
Cma06g00445 Cma-Chr6:2054179 Cma09g00596 Cma-Chr9:2765119 0 dispersed
Cma09g00596 Cma-Chr9:2765119 Cma14g00279 Cma-Chr14:1176406 0 dispersed
Cma13g00996 Cma-Chr13:7694080 Cma09g00596 Cma-Chr9:2765119 8.22E-29 dispersed
Cma20g00282 Cma-Chr20:1367487 Cma09g00596 Cma-Chr9:2765119 8.89E-52 dispersed
Cma01g01473 Cma-Chr1:10384629 Cma09g00596 Cma-Chr9:2765119 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68796 PF07714 PK_Tyr_Ser-Thr 4.80E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00596 - - csv:101204522 1691.01