Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00597 ATGGACAATGGTATACTGGCAGTGACACTGTCGAAGCCAGATGGAAATGTTACCGGGATCAAATACAGCAACATTGACAACATTTTAGAAGTTCGTGATAAGGAGGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCCGGCACACCGGGAACGACGGGAACGTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGGTTGTGCAAAATGAGGAACAAATAGAGCTCTCATTCAAAAGGAATTATTCATTTAAGGACAAGGAAGTTCCATTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCCTACGCCATCTACGAGCACTTGAGGGAATGGCCACCATTCAACCTCCCTCAAACCAGGATTGTGTTTAAGCTAAGCAAAGACAAGTTTCATTACATGGCGATCGCAGATAACAGAAAGAGATCGATGCCACTCCCTGACGACAGAGTAGGCCGCAGAGGCAAAACCTTGGATTTTCCTGAAGCTGTATTACTAGTCCATCCTAGAGAAGCTGCGTTCAAGGGAGAGGTGGACGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTTCCGACGACCCTCCGATGTTTCTTAGCGCTCACTATGGAGGAGAGGAGTTGGTGCTGAAGATGAATCCTGATGAGCCGTGGAAGAAAATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTGAGAATTTCCCACCACCAAACCAACGTGCTGAGGCATATGTGGGACTGGCAGCGCCGGGAGATGCTGGATCATGGCAGACCGAAACCAAGGGCTACCAGTTTTGGACCAAAACAGATGCATATGGCTCGTTTAGCATCGAAAATGTGCGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCATTACGACGTTGTCATTAGCGTCTCTGCAGGTAGTGATATCGACATAGGGGATCTTGTTTTTGAGCCGCCAAGGAATGGTCCAACGGTGTGGGAAATAGGCATTCCTGATCGCTCTGCAAATGAATTCTATATTCCTGATCCTAACCCAAACTACATTAACAAATTGACCAGAAATGATGGGTCCCATTTACCAACCACGTGGCAAATCAAGTTTACACTCGATAACAACGTAGATAAGAGCGGTATCTATAAATTGCGAGTGGCTTTGGCCACTGCCAATGTTGCTGAATTACAGATTCGGGTGAACAATCTAGAAGTAGAGCATGCTCTATTTACGACTGGACAAATTGGACACGACAATGCAATTGCAAGACATGGCATTCATGGACTCTATCGACTCTATAGTGTCGACATGTCGGGATCTGTACTGGTAGAAGGAGAGAACACCATCTTCCTTTCACAAATTATAAACGATTCATCTTTCAACGGCGTGATAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAAGTTCTTGTCCAGTTCGATAAGTCTATGACTGAGGCTCTGGAATCACAGATCCATAAGCTCGAAGCCTGCTTCAAAAAGAAGCTGAAGCAATTGTGCTTTGCTTTGATGGCAAACGGCGGCGTTCTGCACGTAGTGGTATTCCCATGGCTAGCCTTGGGCCATCTCATTCCCTATGCTCGTCTCGCCATTTGTTTAGCCCAAAAGGGCCTTAAAGTTTCCTTCATATCAACCCCAAGGAACCTCGGTAGAATTCCCAAAATACCCCCACACCTCTCCTCCGCCGTAAACCTCGTTGGCTTCCCTCTGCCCCCCGTCGACGATCTTCCGGTCGCCGCCGAGGCTTCCTCCGACGTACCGTACAACAAGCAACAGCTATTGAAGAAGGCCTTCGACTCTTTGGAATCGCCGTTGTCCGATTTGCTTCGCGATTTAAATCCCGATTGGATTATCTACGATTACGCCTCTCACTGGCTTCCGCCACTCGCGGCAGAGCTCCGTATATCGACTGTTTACTTCAGCCTCTTCACCGCCGCGTTCCTTGCCTTTCTCGGCCCGCCGTCGAAGCTGTCCTATGGCGGAGGTTCCCGGTCAACGGTGGAGGACTTCATGAAGGTCCCTGAGTGGATGCCTCCAGAATCGAACATCCTCTTCCGGTACCATGAGATAAAAAAATCCTTAGACGGAGCAACCGGAAATGAATCCGGAACGTCCGATTCAATCCGATTCGGTGTTTCAATCGAAGAGAGTGTGGCTGTGGCCGTAAGAAGCTCCCCGGAACTGGAGCCGGAATCGTTCGATTTGCTCTCAAAGCTCTACCAGAAGCCAGTCATTCCGATTGGATTCCTACCTCCATTAACGGAAGACGCAGAGGAACTGAGCGGAGATATCAAAGAATGGTTGGAGAAACAGAAACCGAACTCAGTTCTGTACGTTTCATTTGGAACTGAAGCGTTTCTGAGTCAAGAAGACGTCACTGAACTAGCCTTCGGGCTGAAGAAATCTGAGATTCCATTTTTGTGGATTCTGAGAAGAAATTCACATAAGAACGAATCAGAAATGTTACCAGCCGGATTCAAGGAGCAAGTCGGAGGCCGAGGATTGCTTCACGAAGGATGGATCTCACAGGTGAAGGTACTGAGTCACAACTCGGTTGGCGGTTGTTTGACTCACTGTGGATGGAACTCAATCATAGAAGGGCTCGGATTTGGGCGAGTCATGATTCTCTTTCCTGTTGTGAACGACCAGGGATTGAACGCAAGACTGTTGGAGGAGAAGAAACTCGGAATCGAGATCGTGAGGAATGAAAGAGATGGATCATTCACGCGCGACTCGGTTTCAGAATCGGTGAGGTCGGCCATGGCAGAAGGTTCGGACACAGGCAAACGATTGAAACAGAGAGCAATGGAAATGAAAGAGTTGTTTGGAGACGGAGATAAGAATGAACGTCACCTGGACGGGTTTGTGCACTTTCTTAAGTCAAAACAGAAATGA 3054 47.41 MDNGILAVTLSKPDGNVTGIKYSNIDNILEVRDKEAHRGYWDLVWNSGTPGTTGTFDEMRGKEFEVVVQNEEQIELSFKRNYSFKDKEVPLNIDKRFIMLRNSSGFYSYAIYEHLREWPPFNLPQTRIVFKLSKDKFHYMAIADNRKRSMPLPDDRVGRRGKTLDFPEAVLLVHPREAAFKGEVDDKYQYSCENKDLKVHGWISMDPSDDPPMFLSAHYGGEELVLKMNPDEPWKKMTKEVQSWPYSFPASENFPPPNQRAEAYVGLAAPGDAGSWQTETKGYQFWTKTDAYGSFSIENVRIGDYNLYAWVPGFIGDYHYDVVISVSAGSDIDIGDLVFEPPRNGPTVWEIGIPDRSANEFYIPDPNPNYINKLTRNDGSHLPTTWQIKFTLDNNVDKSGIYKLRVALATANVAELQIRVNNLEVEHALFTTGQIGHDNAIARHGIHGLYRLYSVDMSGSVLVEGENTIFLSQIINDSSFNGVIRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQIHKLEACFKKKLKQLCFALMANGGVLHVVVFPWLALGHLIPYARLAICLAQKGLKVSFISTPRNLGRIPKIPPHLSSAVNLVGFPLPPVDDLPVAAEASSDVPYNKQQLLKKAFDSLESPLSDLLRDLNPDWIIYDYASHWLPPLAAELRISTVYFSLFTAAFLAFLGPPSKLSYGGGSRSTVEDFMKVPEWMPPESNILFRYHEIKKSLDGATGNESGTSDSIRFGVSIEESVAVAVRSSPELEPESFDLLSKLYQKPVIPIGFLPPLTEDAEELSGDIKEWLEKQKPNSVLYVSFGTEAFLSQEDVTELAFGLKKSEIPFLWILRRNSHKNESEMLPAGFKEQVGGRGLLHEGWISQVKVLSHNSVGGCLTHCGWNSIIEGLGFGRVMILFPVVNDQGLNARLLEEKKLGIEIVRNERDGSFTRDSVSESVRSAMAEGSDTGKRLKQRAMEMKELFGDGDKNERHLDGFVHFLKSKQK 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2782929 2798084 - CmaCh09G005970.1 Cma09g00597 300602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00597 1017 CDD RGL4_N 1 237 - -
Cma09g00597 1017 Gene3D - 262 334 - -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 236 375 - -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 213 237 - -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 376 484 - -
Cma09g00597 1017 Gene3D Glycogen Phosphorylase B; 557 818 - -
Cma09g00597 1017 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 488 535 - -
Cma09g00597 1017 CDD RGL4_M 263 337 IPR029413 -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 208 - -
Cma09g00597 1017 Coils Coil 406 426 - -
Cma09g00597 1017 CDD RGL4_C 349 484 - -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 1 208 - -
Cma09g00597 1017 CDD TFIIA_gamma_N 489 534 IPR015872 GO:0005672|GO:0006367
Cma09g00597 1017 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 489 534 IPR015872 GO:0005672|GO:0006367
Cma09g00597 1017 Pfam Rhamnogalacturonate lyase family 1 184 IPR010325 -
Cma09g00597 1017 SUPERFAMILY Galactose-binding domain-like 344 483 IPR008979 -
Cma09g00597 1017 Pfam Polysaccharide lyase family 4, domain II 262 333 IPR029413 -
Cma09g00597 1017 SUPERFAMILY Starch-binding domain-like 278 333 IPR013784 GO:0030246
Cma09g00597 1017 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 793 952 IPR002213 GO:0008194
Cma09g00597 1017 Gene3D - 486 538 IPR009083 GO:0005672|GO:0006367
Cma09g00597 1017 Gene3D - 380 484 - -
Cma09g00597 1017 CDD GT1_Gtf-like 563 1012 IPR002213 GO:0008194
Cma09g00597 1017 Gene3D Glycogen Phosphorylase B; 819 995 - -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 236 375 - -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 213 237 - -
Cma09g00597 1017 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 376 484 - -
Cma09g00597 1017 Pfam Polysaccharide lyase family 4, domain III 347 483 IPR029411 -
Cma09g00597 1017 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 563 1001 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01469 Cma09g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00580 Cma-Chr7:2509871 Cma09g00597 Cma-Chr9:2782929 2.15E-133 dispersed
Cma07g00581 Cma-Chr7:2512777 Cma09g00597 Cma-Chr9:2782929 2.68E-130 dispersed
Cma09g00597 Cma-Chr9:2782929 Cma04g00857 Cma-Chr4:4387318 3.99E-147 dispersed
Cma14g02055 Cma-Chr14:14295195 Cma09g00597 Cma-Chr9:2782929 1.11E-94 dispersed
Cma20g00023 Cma-Chr20:84892 Cma09g00597 Cma-Chr9:2782929 9.50E-59 dispersed
Cma04g00555 Cma-Chr4:2814143 Cma09g00597 Cma-Chr9:2782929 6.32E-65 transposed
Cma11g01273 Cma-Chr11:8545547 Cma09g00597 Cma-Chr9:2782929 2.91E-71 transposed
Cma19g00901 Cma-Chr19:8194529 Cma09g00597 Cma-Chr9:2782929 3.82E-73 transposed
Cma01g01467 Cma-Chr1:10326381 Cma09g00597 Cma-Chr9:2782929 1.52E-180 wgd
Cma12g00212 Cma-Chr12:1038153 Cma09g00597 Cma-Chr9:2782929 0 wgd
Cma03g00853 Cma-Chr3:6372866 Cma09g00597 Cma-Chr9:2782929 9.59E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00597 K18195 - csv:101204193 805.438