Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00600 ATGGGGAGATGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAAGTGACTTTCTCGAAACGTAGGAGCGGACTGCTGAAGAAGGCGGAAGAACTGGCGATCCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACTAACAAACTCTACGAATACTCCAGCTCCAGCATGAAAACACTAATAGAACGATATAATAAAACAAAAGAGGAGCACCATCAGCTTGGGAACTCGACTTCTGAAGTCAAGTATTGGCAAAGGGAAGCAGCAATGTTACGGCAGCAACTGCAGAGCTTACATGAAAATCATCGGCAAATGATGGGTGAAGAGCTGACTGGTCTAAGCGCCAAAGATCTACAGAATCTAGAAAATCAATTGGAGATAAGTCTCCGTGGCATCCGTATGAAGAAGGAAAAAATCTTAATGGATGAGATACAAGACCTAAATAGAAAGGTAAACCTAATTCACCAAGACAATACGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAATCTGGAATTACACAAAAAGGTCTATGGAACAAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTAGTGTTGGAGAGGATGCAGGCATACCTATCGACCTTCAGCTCAGCCAGCCACAGCCACAAGACCATGAGGCACCAGAAAGAGCTACAAAACTAGGACTACAACTACGCTAG 717 43.51 MGRCKIVIRRIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSSSSMKTLIERYNKTKEEHHQLGNSTSEVKYWQREAAMLRQQLQSLHENHRQMMGEELTGLSAKDLQNLENQLEISLRGIRMKKEKILMDEIQDLNRKVNLIHQDNTELYKKVNLIRQENLELHKKVYGTKDANGAHISSLTNGLSVGEDAGIPIDLQLSQPQPQDHEAPERATKLGLQLR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2804731 2816447 + CmaCh09G006000.1 Cma09g00600 300605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00600 238 MobiDBLite consensus disorder prediction 217 238 - -
Cma09g00600 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 234 - -
Cma09g00600 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma09g00600 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma09g00600 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma09g00600 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma09g00600 238 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cma09g00600 238 Coils Coil 123 143 - -
Cma09g00600 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma09g00600 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma09g00600 238 Coils Coil 86 113 - -
Cma09g00600 238 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Cma09g00600 238 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cma09g00600 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Cma09g00600 238 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g00600 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma09g00600 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01466 Cma09g00600 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00409 Cma-Chr4:2097635 Cma09g00600 Cma-Chr9:2804731 3.67E-97 dispersed
Cma09g00600 Cma-Chr9:2804731 Cma16g00281 Cma-Chr16:1313922 7.62E-84 dispersed
Cma16g00276 Cma-Chr16:1285453 Cma09g00600 Cma-Chr9:2804731 4.76E-36 dispersed
Cma19g00475 Cma-Chr19:5685284 Cma09g00600 Cma-Chr9:2804731 1.85E-33 dispersed
Cma01g01466 Cma-Chr1:10310670 Cma09g00600 Cma-Chr9:2804731 4.33E-152 wgd
Cma03g00854 Cma-Chr3:6379767 Cma09g00600 Cma-Chr9:2804731 3.39E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35618 PF01486 K-box 1.30E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00600 K09264 - csv:101203545 414.461