Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00606 ATGGAGCTCAATGAACACTACTTGTTTGAAGAACTCTTAGCTTTGAAAAGAGAGATCAATTGGGAATTTGCAATGCCCACAGACATTAATGGCTGGAATTTTGATTGCTCTGATTCTATGGCAATGGATGAACTCAACCTTAGTTACCTTCTTAATGGCCAAGGTCAGTATTCTTTTCCCGCCGATCAGTTCACGGCGGCGGCGGCGGCGAGTACCGGCGATTCGATGAGTTTTGAGGTTTACAATGGGGAATATCCGATTATGAATATGGAAGAGGAGGAGCTTGGAATTCTGGAGGATGAAATTCATAATCTTGAAGTTCAGGCCAATTGTAAAGTGGAAGCTGTTCAATCTCCTGAAGAAATCGTTCCCAACGCCGGCGATTTTGGGCAAAAAATCGTGAATTCCAATCGGAAGAAACTTCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTCAATGATCGCCTCTCCATGCTCCGATCCATTGTCCCCAAAATCAGCAAGATGGATCGAACCGCGATTCTTGCGGATGCGATTGAGTACGTGAAGGAACTGGTGGAGAAAATCAAGAATTTGCAGACGGAAATTGAAGCGGGGAATGATCCGAATAAGTTGGGGATTTTGAGAGATTTAAAAAGGAATGAATATTCGGTGAGAAATTCGGCGAAGTTCAATGTGGAGAGGAGAGAGGGGGAGACTGGGATAGAGATTTGCTGTGCGGCCAAGCCAGGCCTGTTGCTGTCCACTGTCCAAACTCTCGAAGCGTTGGGGCTTGATATTCAGCACTGTGTCGTTAGCTGCTTCAATGACTTCGCAATCCAAGCTTCTTGTTCTGAGGGAGAGGAGCAAAGAAGTCGTATGAGCACGGAAGAAGTAAAGCAAGCGTTATTTCAAACCGCTGGGTATGGAGGAAGATGCCCGTAG 945 46.98 MELNEHYLFEELLALKREINWEFAMPTDINGWNFDCSDSMAMDELNLSYLLNGQGQYSFPADQFTAAAAASTGDSMSFEVYNGEYPIMNMEEEELGILEDEIHNLEVQANCKVEAVQSPEEIVPNAGDFGQKIVNSNRKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELVEKIKNLQTEIEAGNDPNKLGILRDLKRNEYSVRNSAKFNVERREGETGIEICCAAKPGLLLSTVQTLEALGLDIQHCVVSCFNDFAIQASCSEGEEQRSRMSTEEVKQALFQTAGYGGRCP 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2852285 2853467 + CmaCh09G006060.1 Cma09g00606 300611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00606 314 Pfam Helix-loop-helix DNA-binding domain 149 192 IPR011598 GO:0046983
Cma09g00606 314 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 60 313 - -
Cma09g00606 314 CDD ACT_UUR-ACR-like 242 281 - -
Cma09g00606 314 Coils Coil 182 202 - -
Cma09g00606 314 Coils Coil 88 108 - -
Cma09g00606 314 SMART finulus 149 198 IPR011598 GO:0046983
Cma09g00606 314 Gene3D - 135 210 IPR036638 GO:0046983
Cma09g00606 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Cma09g00606 314 PANTHER - 60 313 - -
Cma09g00606 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 205 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00563 Cma09g00606 CCT
Cma01g01461 Cma09g00606 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00563 Cma-Chr5:2765253 Cma09g00606 Cma-Chr9:2852285 1.09E-93 dispersed
Cma07g00592 Cma-Chr7:2545979 Cma09g00606 Cma-Chr9:2852285 2.40E-69 dispersed
Cma09g00606 Cma-Chr9:2852285 Cma12g00174 Cma-Chr12:791251 5.71E-94 dispersed
Cma01g01461 Cma-Chr1:10276379 Cma09g00606 Cma-Chr9:2852285 4.45E-136 wgd
Cma03g00858 Cma-Chr3:6395689 Cma09g00606 Cma-Chr9:2852285 1.88E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35619 PF00010 HLH 4.30E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00606 - - csv:101222621 384.8