Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00609 ATGGCAGGAGTTTTTAGAGAAAGAGCACTGTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTGAAGCAGGTGAAGGATATCATACTAGCCATCGAGTCATCTTTCGCAGCAGAGCTCTACTCCTACTTGGTCGAGCTTCAGTCTTCCCCTGAGAGCTTACTACGTAAATTGTTAATTGAGGTGATTGAAGACATTGGATTGAGAGCCATGGAACATTCTCCTCTGTTAATGTCAGTTTTATTGGCATCTTTAAAGGATGAAGACTCTATTGTAGCAGGACAATCAATTACTAGTGGGCAAAAATTATTTTGTGGTGCTTTAAGAGAGATGACCTTGCAGTTGCATCGGCGGGGTAAAGTTGAGAGATGGCTTGAAGAACTGTGGCTGAGGATATTGAAGTTTAAAGATGAGGTGTTGGCAATTGCCATAGAGCCTGGTTCTGTTGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACGTCCGATACAAATGATCCACAAAAAGCTATCTCAGAAGGAAATGGGGATGTTTTTAACATTTCATGGCTTGCTGGTGGGTTTCCGATATTGGATCCAGTTGTGCTAGCGTCGGAAGCTAATAGGATGCTTGGTATTCTCTTGAATTTGTTGCAGACCAGTTCTGTTGCTGGTACATACACAGTAACAATTGTCAGTAGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTATCATTCTATCGGCACTGTTGGAATTTGTTCCAAGTTTTGAGATGGTAAAAGGGCGTCATGCTGCCAGTATCCAGTATTCTATAAGATCTGCACTTTTGGGATTCCTAAGGTGTCTGCATCCAGCGTTTGTAGAGCTTGGTTTTCAGTCAAGAGATAGATTGCTAAAGGCTTTAAGAGCTATGAATGCTGGAGATGCTGCAGATCAAGTAATCAGGCAAGTGGACAAAATGGTGAAAGCTGCGGATCGAGCTTCACGTGATGCTTTGCTGGGCAAGGATGACCAATCATCAAATCAGCATAATGCATCAGTGGATCTAACGAGAAAAAGACCTAGGCTCCTGGACGATGAAGAACTTCCCAATGGCCATGAGGTTTCCAAGCAAATTCGCTTTGGTCCAGATTTTCACCCAATTTCCACAGTGCGAAAAGAAGGTTCTCGACCGAATGCCATCTCTAATGGGACATCCCATGATGTTCCTACATTAGATGTTGAATCGACTCCTGCAGAGCAGATGATTGCAATGATTGGTGCCTTACTAGCTGAAGGGGAGCGAGGTGCAGAATCACTTGAAATTCTGATTTCAAATATTCATCCCGACTTGCTGTCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCCCCCCCTCCAACCACTAGGCATGGGGACTTACCTGTAACTCATCAAGTAAGTAGTCACGTACAAGTTCTGGCACCATCAGCTCCATTGAGTTCTGTGCAAACTTCAGTTTCTACTGCACAAGCTCCTTTTTCTTTGGCCACCTCCGCTGGTTCAACTTATGCTGAGTCTGCTGTCAATAGTCTCCCTGTTGACTCTAAACGCGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGCCGTGGAGTATCATCTGCTTCTAGTGTGGAAGAGGCAATTTCAAATACATCTTATGTTGATGGTTCCATATCTTTGGGAAAATCTGCTTCGGTTCCTGTTTCTACGACAATCGAGAATTCTTCGGTATTTTCTATATCTAAAACAAAAGTTGAAGAAAAAATCATTGAAACTCCATTCCCGATTGGAACAGATCAACCAACCCCCAAATCAAAATCTCCTGATAGAGCTGAGAAAGTTGACTCTATATTAGAGATTGATGTCCCTCTGGATCCCTTGTCTACTGCTGTTGGAAAAGCTGATGATGGTTTAGTTGCAGTTAATTTGGTCGATGACTCGGCAACAAAGAGGGATGATACATCGTCTTCTATAGAATACGATCAGTATTCTCCATCAGTTACGAATGCAGCTGCATCTGAAGATACCTGTGAGGAATTGCCTCAGCTTCCTCCATACGTTGACTTAACTCCAGAACAGCAAAAAAGTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCGTGCAAGAATTTAAATGGGGCAGACTGCCATCAGAAATGCTTGGCAATAATTGCTCGAATGGTTGCTCAGGTTGATGCTGATGATGATATTGTTCGAATGTTGGAAAAACAAGTCGCTACTGATTACCAACAGCAAAAGGGGCATGAGCTTGCTTTACATGTCTTATATCACCTGCATTCACTCAATATTCTGGATTCAGTGGAAAGTTCGTCTTTTGCTGTGTACGAGAAGTTTCTTCTAGTTGTGGCCAAATCGCTGCTAGATGCTTTTCCAGCTTCAGACAAATCTTTTAGCAGACTTCTTGGTGAAGTTCCAGTTTTTCCGGACTCTACGTTGGAACTATTACATAACCTTTGCTATTGTGATATTACTGACAACCAGGGGAAGGACAGTCCCGATATTGAACGTGTCACGCAAGGTCTTGGCACTGTTTGGAATTTGATTGTGAAACGACCACATAGTCGGCAAGCTTGCTTAGATATTGCTCTTAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCGAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAGCAAACATGTTCCTGTCTGCAGTAGATGGCGTAGACCAGACAGATGTAAAGCCTTTACCATGTGGATCGATTGAGCAAAGCATTGGAGGAGAGGGTGAGAGTCAGGAAACATCCATTTGTGGTTCTCAAGTTTCAGATCCTGGAACCTCAGAAGACAATTCGACCAGGAGTTCACAACCTACAGTTCATGCCAGTTCAACCTTGTCACTTTCAGAAGCTGAAAGACATATTTCTCTTCTTTTTGCCCTATGCGTTAAGAAACCTTGTCTGCTTCAAACTGTATTTGATGCTTATGGACGGGCTCCTAAAGCCGTAAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGCTCATCTAATGCTGAATTGCTCAGAATAATATCAGATCCACCCCCAGGAAGTGAACATCTTTTAGCAATGGTTCTACAGGTACTAACTCAAGAGACAACGCCTTCTTCCGATCTGATCGCAACCATTAAACATTTATATGAAACTAAACTGAAGGACGTGACTATTCTTATTCCAATGTTGCCCTCGCTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTTGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTCACATATTACAGGGTTCAGCACATACACGTCCAGCTTTAACGCCTGTTGAAGTATTAATTGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTGCGTTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTTGAGCAACGTACAGTGTTCACTCAGCAGGTTCTTGCAAAAGCCTTGAGCCAGATGGTCGAACAAACGCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTACTCTGGTTGATTTTTTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGGATGCCAAAATTGTGGTTTGGTTTCTTGAAATGTGCATTTGAAACACAACCTCATTCGTTTCGAGTACTATTGCAGTTACCACCGCCACAGCTCGAAAATGCTTTGAACAAATATGTCAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGACCGACGCTCGTACTTCTGGGTATCGAAAACGAAAGGCGTTTCAACGAGCTTGAACTTGGGAATTGGCTAATCAGCTCTTGTTTGGAGTATGAAGCGATTTATCGTCCGTCATCATCCCGTGGCAGTTTGATTGCTTCGGCTATAACTAACTTATCGCACCTTGATCATGATTCTGTGCCACGGTGCATGAACCGGGTGATTGTGAGCAGAGATAACTCAGAAGAACAGGGGTTTGTACCTGACTAA 4128 43.02 MAGVFRERALSLLAAANNHGDLTVKISSLKQVKDIILAIESSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSIVAGQSITSGQKLFCGALREMTLQLHRRGKVERWLEELWLRILKFKDEVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNGDVFNISWLAGGFPILDPVVLASEANRMLGILLNLLQTSSVAGTYTVTIVSSLAAIARKRPVHYGIILSALLEFVPSFEMVKGRHAASIQYSIRSALLGFLRCLHPAFVELGFQSRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDALLGKDDQSSNQHNASVDLTRKRPRLLDDEELPNGHEVSKQIRFGPDFHPISTVRKEGSRPNAISNGTSHDVPTLDVESTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLSDIVITNMKNLPKAPPPTTRHGDLPVTHQVSSHVQVLAPSAPLSSVQTSVSTAQAPFSLATSAGSTYAESAVNSLPVDSKRDPRRDPRRLDPRRGVSSASSVEEAISNTSYVDGSISLGKSASVPVSTTIENSSVFSISKTKVEEKIIETPFPIGTDQPTPKSKSPDRAEKVDSILEIDVPLDPLSTAVGKADDGLVAVNLVDDSATKRDDTSSSIEYDQYSPSVTNAAASEDTCEELPQLPPYVDLTPEQQKSVRNLAAEKIFDSCKNLNGADCHQKCLAIIARMVAQVDADDDIVRMLEKQVATDYQQQKGHELALHVLYHLHSLNILDSVESSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVFPDSTLELLHNLCYCDITDNQGKDSPDIERVTQGLGTVWNLIVKRPHSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHAANMFLSAVDGVDQTDVKPLPCGSIEQSIGGEGESQETSICGSQVSDPGTSEDNSTRSSQPTVHASSTLSLSEAERHISLLFALCVKKPCLLQTVFDAYGRAPKAVKEAVHEHIPNLITALGSSNAELLRIISDPPPGSEHLLAMVLQVLTQETTPSSDLIATIKHLYETKLKDVTILIPMLPSLSKNEVLPVFPRLVDLPLEKFQRALAHILQGSAHTRPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPTLVDFFMEILSKLVNRQVWRMPKLWFGFLKCAFETQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSTKSTLSRPTLVLLGIENERRFNELELGNWLISSCLEYEAIYRPSSSRGSLIASAITNLSHLDHDSVPRCMNRVIVSRDNSEEQGFVPD 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2861808 2881280 + CmaCh09G006090.1 Cma09g00609 300614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00609 1375 MobiDBLite consensus disorder prediction 526 559 - -
Cma09g00609 1375 Gene3D - 2 343 IPR011989 -
Cma09g00609 1375 MobiDBLite consensus disorder prediction 948 987 - -
Cma09g00609 1375 MobiDBLite consensus disorder prediction 341 363 - -
Cma09g00609 1375 MobiDBLite consensus disorder prediction 942 987 - -
Cma09g00609 1375 Pfam Symplekin tight junction protein C terminal 1093 1271 IPR022075 -
Cma09g00609 1375 Pfam Symplekin/PTA1 N-terminal 97 315 IPR032460 -
Cma09g00609 1375 MobiDBLite consensus disorder prediction 398 415 - -
Cma09g00609 1375 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1306 - -
Cma09g00609 1375 SUPERFAMILY ARM repeat 13 1228 IPR016024 -
Cma09g00609 1375 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1306 - -
Cma09g00609 1375 MobiDBLite consensus disorder prediction 396 415 - -
Cma09g00609 1375 MobiDBLite consensus disorder prediction 533 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00609 K06100 SYMPK; symplekin - csv:101202828 2214.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00347 Cma-Chr3:4152297 Cma09g00609 Cma-Chr9:2861808 6.77E-172 transposed
Cma01g01458 Cma-Chr1:10240832 Cma09g00609 Cma-Chr9:2861808 3.06E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00609 Cma_Chr09 FPKM 3.577438 4.7252 5.046588 4.909133 6.851737 7.578329 7.272634 8.484879 7.153042 7.779984