Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00611 ATGTCGTCTCTACATTTCCTCTCTCTTCTCTCTCTCCTCATCTCCTTCCTCACCGGAATCAAATCCGACGACGAACGTCAAATCCTAACCAAACTCATCTCCTCTCTCCACAACACAGACGCCGCCGTCTTCCGCAACTGGAAACTCCAAACCCCCAAATGCAATTTCACCGGAATCGCCTGCAATTCACACGGGTTCGTCAACGAAATTAACCTCTCCAAATGGGGTTTATCCGGCGTTCTTGCTTTTGATTCCGTTTGCCAGTTGCCGGCGTTGGAAAAGCTGATTCTTCGCGCCAATTCCCTGCACGGCGAAGTGACAGAGAGTTTAAACAATTGTGTAAAACTGAAGCATTTGGATCTCAGCAGCAATGGCTTCTCCGGCTCTTTCCCGGACATACATTCGTTGCCGGAATTGGAGTATCTGTATTTGAATTCAAGTGGGTTTTCCGGTAAGTTTCCATGGAAATCCGTCGGGAATTTGAGCGGTTTGATTGAGCTGAGTGTCGGAGATAACCCTTTTGAAAACGCTACTTTTCCGGTGGAGGTCACTGATTTGAAGAGGCTTAATTTGCTGTACTTGTCGAATTGTAGCTTAACAGGGGAAATTCCAAGATCTATTGGTAATCTCACGGAGCTTCTTAGTTTTGAATTTTCCGACAATTTTATAACAGGGACTATTCCGCCGGAAATTGGCCGCCTGCAGAAGCTCTGGCAGTTGGTGTTCTATAATAATCAGTTAACGGGGACACTTCCGGTGGGATTAAGAAACCTTACCGGCCTTAAGAATTTCGATGCTTCGTTGAATTATATCCATGGGGATTTGTCGGAGTTGAGGTTTTTGACGAATTTGGTTTCTCTGCAAATGTTTGATAATCAATTTTCCGGCCATGTTCCGGTGGAGTTTGGGGAGTTTAAGTCGCTGGTTAATCTGTCCCTTTATAGGAATAGGCTTACGGGGCCTCTGCCGCATGCCATTGGTTCTTGGGCGGCGTTTGATTTCATTGATGTGTCGGAGAATTTATTGACAGGATCGATTCCTCCGGATATGTGTAAGCAGGGGACGATGCAGAAGCTTTTGATTCTTCAGAACAATTTCTCCGGCGAGATTCCGGCGACTTACGCTAATTGCTCCACTTTGAACCGATTTAGAGTCAGTCAGAACTTGCTCACCGGGGTTGTTCCGTCGGAAATTTGGGGATTGCCAAATGTGAATATAATTGATCTTGCTTCAAATCAGTTGACTGGTTCGATCACTTCCGATATTGGAAAGGCGGTGGCTCTCTCTAAATTTTATGTCGGAAATAATCGGTTCTCAGGCAAATTGCCATTGGAGATTTCACAAGCGAAATCTCTCGCTTCTGTTGACCTGAGTAATAATCAGTTCTCCGATGAACTTCCGACGACTATCGGTGACCTGAAGAATCTCGATATCCTCGAATTGCAGGGGAATAAATTCTCCGGTTCGATTCCAGAGACAATCGGCTTGTGTAATTCTCTAAGTATCGTTAATTTGGCGGAAAATTTCTTCTCCGGACAAATTCCTTCGTCTCTAGGTTTTCTTCAGGTTCTCAACTCTTTGAATCTCTCCAATAATGACCTATCAGGTGAAATCCCTTCGACATTTTCACATTTGAAATTGAGTCTTCTCGATCTTTCCAACAATCAATTATCTGGTCCAATTCCTCAATCACTATCGAATGGAGCTTACATAGAAAGCTTCACCGGAAATCCTGGCCTGTGCAGCGAGGCGGACGGCTTTTTACGGCGATGTTCAAAGAGTTCAGGCACGTCTAGGGACGTTCGAATACTCGTCATTGGTATCGTTGTCGGATTAGTTCTTCTCAGTGCGACACTATGGTGCTTCATAAAATTGAGAAAGAGCGACAAATATCGAGATCGGTCGCTTAAAAAGGAATCATGGAACCTAAAATCATTTCACGTAATGACGTTCACAGGGGACGAGATACTCGATTCCATTAAGGACGAGAATTTAATCGGAAAAGGAGGTTCCGGCAGCGTTTACAAAGTGACGATCGAAAATGGGAAAGAGTTAGCCGTGAAGCACATTTGGAACACCGATCCATACGAGAGAATGAACAACAACAATAACCGAAGCTCCTCTCCAATTCTACCGAAACAGAGAGCAACGTCGTTGGAATTCGACTCAGAGGTGAAGACTCTAAGTTCGATCCGTCATGTGAATGTAGTGAAGTTATACTGTAGCATTACGAGCGATGTCTCAAGCCTATTGGTATACGAATATATGTCTAATGGAAGCTTATGGGATAGACTTCACACGTCAACAAAAATGGAGTTAGATTGGGAAACAAGATACGAAATCGCAGTCGGAGCAGCAAAGGGATTAGAGTATCTTCATCACAGTTGCGACCAACCAGTGATTCACAGAGATGTCAAATCCAGCAACATACTTTTGGATGAATTTCTCAAACCCAAAATAGCCGATTTCGGGCTTGCCAAAATCCTCAACACAAGTGGGTTCAACGAGACAAGCCATGTCGTTGCAGGCACTCCTGGCTACATCGCACCAGAGTATGGATACAGTTACAAAGTGGACGAGAAGAGTGACGTGTACAGCTTCGGAGTGGTATTGATGGAGTTAGTGAGCGGGAAAAGAGCGATCGAGGCGGAGTTAGGAGAGAACAAGGAGATTGTGGAGTGGGTATCAAACAATTTGAAGAGCAGAGAAAGTGTATTAAAGTTGGTGGATTCAAGAATTGGCGATGTATATAAAGAGGAAGCCATAAAGGTATTAAGAATTGGAATATTGTGCACAGCGAGGGTTCCTTCCATGAGACCCACCATGAGGAGTGTGGTTCAAATGCTTGAAGAAGCCCACCCCTGTCGCCTGCTTGGGATACTCATTGCCAAAGATATCAACAAGATTGATATCTAA 2916 44.44 MSSLHFLSLLSLLISFLTGIKSDDERQILTKLISSLHNTDAAVFRNWKLQTPKCNFTGIACNSHGFVNEINLSKWGLSGVLAFDSVCQLPALEKLILRANSLHGEVTESLNNCVKLKHLDLSSNGFSGSFPDIHSLPELEYLYLNSSGFSGKFPWKSVGNLSGLIELSVGDNPFENATFPVEVTDLKRLNLLYLSNCSLTGEIPRSIGNLTELLSFEFSDNFITGTIPPEIGRLQKLWQLVFYNNQLTGTLPVGLRNLTGLKNFDASLNYIHGDLSELRFLTNLVSLQMFDNQFSGHVPVEFGEFKSLVNLSLYRNRLTGPLPHAIGSWAAFDFIDVSENLLTGSIPPDMCKQGTMQKLLILQNNFSGEIPATYANCSTLNRFRVSQNLLTGVVPSEIWGLPNVNIIDLASNQLTGSITSDIGKAVALSKFYVGNNRFSGKLPLEISQAKSLASVDLSNNQFSDELPTTIGDLKNLDILELQGNKFSGSIPETIGLCNSLSIVNLAENFFSGQIPSSLGFLQVLNSLNLSNNDLSGEIPSTFSHLKLSLLDLSNNQLSGPIPQSLSNGAYIESFTGNPGLCSEADGFLRRCSKSSGTSRDVRILVIGIVVGLVLLSATLWCFIKLRKSDKYRDRSLKKESWNLKSFHVMTFTGDEILDSIKDENLIGKGGSGSVYKVTIENGKELAVKHIWNTDPYERMNNNNNRSSSPILPKQRATSLEFDSEVKTLSSIRHVNVVKLYCSITSDVSSLLVYEYMSNGSLWDRLHTSTKMELDWETRYEIAVGAAKGLEYLHHSCDQPVIHRDVKSSNILLDEFLKPKIADFGLAKILNTSGFNETSHVVAGTPGYIAPEYGYSYKVDEKSDVYSFGVVLMELVSGKRAIEAELGENKEIVEWVSNNLKSRESVLKLVDSRIGDVYKEEAIKVLRIGILCTARVPSMRPTMRSVVQMLEEAHPCRLLGILIAKDINKIDI 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2889430 2892531 + CmaCh09G006110.1 Cma09g00611 300616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00611 971 ProSiteProfiles Leucine-rich repeat profile. 115 137 IPR001611 GO:0005515
Cma09g00611 971 SUPERFAMILY RNI-like 69 391 - -
Cma09g00611 971 Gene3D Phosphorylase Kinase; domain 1 643 755 - -
Cma09g00611 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Cma09g00611 971 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cma09g00611 971 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 7 960 - -
Cma09g00611 971 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515
Cma09g00611 971 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515
Cma09g00611 971 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Cma09g00611 971 SUPERFAMILY Protein kinase-like (PK-like) 649 950 IPR011009 -
Cma09g00611 971 Gene3D Ribonuclease Inhibitor 351 599 IPR032675 -
Cma09g00611 971 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Cma09g00611 971 Gene3D Ribonuclease Inhibitor 180 279 IPR032675 -
Cma09g00611 971 Gene3D Ribonuclease Inhibitor 280 350 IPR032675 -
Cma09g00611 971 SUPERFAMILY RNI-like 323 567 - -
Cma09g00611 971 Pfam Protein kinase domain 662 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00611 971 SMART serkin_6 660 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00611 971 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Cma09g00611 971 ProSiteProfiles Protein kinase domain profile. 660 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00611 971 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 960 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00571 Cma09g00611 CCT
Cma09g00611 Cma12g00230 CCT
Cma01g01456 Cma09g00611 CCT
Cma01g01455 Cma09g00611 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01456 Cma-Chr1:10227901 Cma09g00611 Cma-Chr9:2889430 0 dispersed
Cma04g02482 Cma-Chr4:17046210 Cma09g00611 Cma-Chr9:2889430 0 dispersed
Cma09g00611 Cma-Chr9:2889430 Cma13g00622 Cma-Chr13:5990548 0 dispersed
Cma09g00611 Cma-Chr9:2889430 Cma09g00612 Cma-Chr9:2893612 0 tandem
Cma19g00514 Cma-Chr19:6033034 Cma09g00611 Cma-Chr9:2889430 0 transposed
Cma01g01455 Cma-Chr1:10221745 Cma09g00611 Cma-Chr9:2889430 0 wgd
Cma12g00230 Cma-Chr12:1131420 Cma09g00611 Cma-Chr9:2889430 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68797 PF00069 Pkinase 1.20E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00611 - - csv:101223100 1489.17