Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00612 ATGGAATCAATTTTGATTGAACAAATTCTTGAAGCGATTCAAATTATTCCTTCTCTTCATTCTTCTCATATTATTGCTCCCTGCACTCACTCATCCCCCCATATTATATACTTCTCTTCCTCCGCCTCCTCCTCTGCCACACCGCCGCCGCCAACATCAACAATGGCCCTCCTTTTCTACTTCTTCTTTCTTCTTCTTTCTTTCATTTCTCAACCCATTGGAGGTGATCGATCTCTGTTTCTAACTATGATGCAAGACCTTTTGATCGGGAATTCTTCGCCGTCCGATTGGGATGTTTCCGGCGGGACTTCGTTATGTAATTTCACCGGCGTCACCTGTAATGAAAAGGGGCTTGTGGTTGGGATTGATCTCTCCGGCAGGGAGGTTTCCGGGAAGTTTCCGGCGGATGTGTGTACTTATTTGCCGGAGTTGAGAGTGTTGCGACTTGGGCAGAGTGGTTTACGAGGGACGTTTCCACGTGGGATAACGAATTGCTCTGTTTTGGAGGAATTGGATATGAGTTTTCTGTCTATGACTGGGACTTTACCGGATTTCTCGACGTTGAGAAACCTTAGGATTCTCGACATGTCGTATAACAACTTCACCGGCGAATTCCCGTTGTCGGTCTTCAGTTTAACGAAGCTCGAGAGGCTGAATTTCAACGAGGATAATAATTTCAATATGTGGCAGTTGCCGGAGGATTTGTCGGAGTTGACGAAGATGAAATCGATGGTGTTGACGACTTGTATGTTGGGGGGTCGAATTCCGGCGACGATTGGGAATATGACGGCGATCGTTGACTTGGAATTAAGCGGCAACTTCCTCGCCGGAGAAATTCCGAAAGAAATCGGGAATATGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAATCGGGGAAATTCCAGAGGAGATCGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCGGTCAACAAGTTGACTGGGAAGCTTCCTGAGTCGATTTGTCGTCTTCCTAAGCTTGAAGTTCTTCAGCTTTACAACAACTCCTTAACAGGGGAGATTCCCATTTCAATTTCGAATTCAACAACGCTCACTATGTTATCCCTTTACGACAACTACATGACCGGAGAAGTTCCAAGTAATTTGGGCCAATTTTCACCCATGTTGGTTCTCGACTTGTCGGAAAATCATTTCTCCGGTCCCTTACCGACAGATGTCTGTAGAGAAGGTAAATTAATGTATTTTCTCATGTTGCAAAATAAATTTTCCGGTCAAATCCCGCCGGCGTATGGTAAATGCCAGTCACTTTTACGGTTTCGAGTCAGCTGGAATTTTCTAGAAGGTCCGGTGCCGGCGGGACTTTTGGGTCTTCCACATGCTTCGATTATTGATTTCGCTAACAATAATCTTAGCGGTGAAATTCCGAATTCTTTTGCTGAAGCCAGGAATCTGTCGGAATTGTTCATGCAGAGTAACATGATTTCCGGCGAGTTGCCGCCGGAAATCTCTAAAGCGACCAATTTGGTTAAGATTGATCTTAGCAACAACTTCTTGTCTGGTCCGATTCCTTCTGAAATTGGGAATCTCAAGAGGCTTAATTTGCTGCTTTTGCAACGAAATCACCTGAATTCTTCAATACCCACTTCGCTTTCCGAGATTAAATCTCTTAATGTTCTTGATTTATCCGACAATCGACTGTCCGGTAACATCCCGGAAAGCCTCTGTGAATTGTTGCCGAACTCAATCAATTTCTCGAACAACCAACTCTCCGGTCCAATTCCTCTGTCTTTGATCAAATATGGGTTAGTGGAGAGCTTTTCCGGCAACCCAGGATTGTGCGTTTCGATTTATTTAGATTCATCCGACCAAAAATTCCCAGTTTGTTCTCAAAATCTCAACAAAAAACGGCTGAATTCCATCTGGACAATCGGAGTATCAGCGTTCATAATCTTCATCGGAGCTGCTCTGTATCTCCGACGACGATTCAGCCGAGAAAAAACAGTAATGGAACAGGACGAAACACAATCTTCATCGTTTTTCTCATACGATGTCAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGAGAAGAACATTGTCGGCCATGGCGGCGCCGGTACAGTGTACAAAATTGAGCTAAGCAGCGGCGAAATCGTCGCCGTTAAAAGGCCGTGGAGACGAAAGGGGAAGGACCGACGGTCGGATCAGGAGCAGCTGTTCTTGGACAAAGAGCTGAAAACTGAAGTGGAGACATTGGGGAGTATAAGGCATAAGAACATCGTGAAATTATACTGCCATTTCTCCAGCTTGGACTGCAGCCTTTTGGTGTACGAGTACCTGCCCAACGGCAATTTATGGGACGCCCTGCATAAGGGTTGGGTTCATTTGGACTGGCCGACACGGCACCAGATTGCGTTGGGCATAGCGCAGGGCTTGGCTTACCTTCACCATGATCTATCGCCTTCTATAATTCATAGAGACATTAAAACCACTAATATTCTGTTGGATGTTCATTATCAGCCTAAAGTTGCAGATTTTGGCATTGCTAAAGTCTTGCAAGCTAGAGCAGGCAAGGACTCGACCACCACCGTCATCGCCGGTACTTACGGCTATCTCGCCCCGGAATATGCATATTCATCGAAAGCCACGACGAAGTGCGACGTGTATAGCTTTGGAATCGTGTTGATGGAGCTGATAACGGGGAAGAAGCCTGTGGAAGCAGAGTTCGGAGAGAACAAGAACATTATATATTGGGTTTCGAATAAAGTAGACACAAAGGAAGGAGCCGTAGAAGTTTTGGACAAGAAAGTTTCGTTATCGTTTAAAGATGAGATGATTCAAGTTCTAAAGATTGCAATTCGGTGCACGTACAAGAATCCTGCACTTAGACCCACCATGAAGGATGTGGTACACTTGTTAATTGAAACCGACCCTTGCAAACTCGATTCTCACAACAAATGCCCTAAACACACTACCACCACCACCACCACGAGAATCAAGAACTCATTTGACCTATGA 3030 45.02 MESILIEQILEAIQIIPSLHSSHIIAPCTHSSPHIIYFSSSASSSATPPPPTSTMALLFYFFFLLLSFISQPIGGDRSLFLTMMQDLLIGNSSPSDWDVSGGTSLCNFTGVTCNEKGLVVGIDLSGREVSGKFPADVCTYLPELRVLRLGQSGLRGTFPRGITNCSVLEELDMSFLSMTGTLPDFSTLRNLRILDMSYNNFTGEFPLSVFSLTKLERLNFNEDNNFNMWQLPEDLSELTKMKSMVLTTCMLGGRIPATIGNMTAIVDLELSGNFLAGEIPKEIGNMKNLRQLELYYNSLIGEIPEEIGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGEVPSNLGQFSPMLVLDLSENHFSGPLPTDVCREGKLMYFLMLQNKFSGQIPPAYGKCQSLLRFRVSWNFLEGPVPAGLLGLPHASIIDFANNNLSGEIPNSFAEARNLSELFMQSNMISGELPPEISKATNLVKIDLSNNFLSGPIPSEIGNLKRLNLLLLQRNHLNSSIPTSLSEIKSLNVLDLSDNRLSGNIPESLCELLPNSINFSNNQLSGPIPLSLIKYGLVESFSGNPGLCVSIYLDSSDQKFPVCSQNLNKKRLNSIWTIGVSAFIIFIGAALYLRRRFSREKTVMEQDETQSSSFFSYDVKSFHRISFDPREIIESMVEKNIVGHGGAGTVYKIELSSGEIVAVKRPWRRKGKDRRSDQEQLFLDKELKTEVETLGSIRHKNIVKLYCHFSSLDCSLLVYEYLPNGNLWDALHKGWVHLDWPTRHQIALGIAQGLAYLHHDLSPSIIHRDIKTTNILLDVHYQPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAVEVLDKKVSLSFKDEMIQVLKIAIRCTYKNPALRPTMKDVVHLLIETDPCKLDSHNKCPKHTTTTTTTRIKNSFDL 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2893612 2896982 + CmaCh09G006120.1 Cma09g00612 300617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00612 1009 Pfam Leucine rich repeat N-terminal domain 91 114 IPR013210 -
Cma09g00612 1009 SMART serkin_6 698 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00612 1009 SUPERFAMILY RNI-like 303 595 - -
Cma09g00612 1009 Gene3D Ribonuclease Inhibitor 227 289 IPR032675 -
Cma09g00612 1009 Gene3D Ribonuclease Inhibitor 290 356 IPR032675 -
Cma09g00612 1009 Gene3D Ribonuclease Inhibitor 75 226 IPR032675 -
Cma09g00612 1009 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 60 1000 - -
Cma09g00612 1009 Pfam Protein kinase domain 700 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00612 1009 Gene3D Phosphorylase Kinase; domain 1 681 783 - -
Cma09g00612 1009 ProSiteProfiles Protein kinase domain profile. 698 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00612 1009 SUPERFAMILY Protein kinase-like (PK-like) 676 977 IPR011009 -
Cma09g00612 1009 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 60 1000 - -
Cma09g00612 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Cma09g00612 1009 SUPERFAMILY RNI-like 122 397 - -
Cma09g00612 1009 SMART LRR_typ_2 188 212 IPR003591 -
Cma09g00612 1009 SMART LRR_typ_2 141 165 IPR003591 -
Cma09g00612 1009 SMART LRR_typ_2 286 310 IPR003591 -
Cma09g00612 1009 SMART LRR_typ_2 334 358 IPR003591 -
Cma09g00612 1009 SMART LRR_typ_2 550 574 IPR003591 -
Cma09g00612 1009 Gene3D Ribonuclease Inhibitor 357 620 IPR032675 -
Cma09g00612 1009 Gene3D Transferase(Phosphotransferase) domain 1 784 998 - -
Cma09g00612 1009 Pfam Leucine Rich Repeat 504 526 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01455 Cma-Chr1:10221745 Cma09g00612 Cma-Chr9:2893612 0 dispersed
Cma05g00571 Cma-Chr5:2824500 Cma09g00612 Cma-Chr9:2893612 0 dispersed
Cma09g00612 Cma-Chr9:2893612 Cma12g00230 Cma-Chr12:1131420 0 dispersed
Cma09g00611 Cma-Chr9:2889430 Cma09g00612 Cma-Chr9:2893612 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68798 PF00069 Pkinase 2.20E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00612 - - cmax:111477315 1960.65