Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00613 ATGTCTGCTCCATTGACTCCATCAAAGAGATCACGTGATCGGAACATTGTCAAGTCCAATGGGAAAGGAAAGTGGCAGAAGACATCAGGGTCTCGTTCACATAAGCAATCCTTCAAATTGTCTCCTGGCTATGCTGTCTTTCGTGTTCTCTTTCCTGTTTCCAGAATTGACAGCCTTGCTGGTGGAGATGGAGATGGAGATGTTTTATCTAAAATTAGTGAAGAAACAGGCGTAGAAATCAGAGTAGAAGACACTATCCCTGGATGTGATGAGAGAATTGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACCCCGAGGAGAAGAGAAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGAGGGTGATAATGCCGAGTGGACAAAGAAGGAAGACAAAGTTTCTCTTCCTGGGGAAGAATCTAAACAAAAGGAGGTTCCATATTTGCAATTGCGAAAAGCCCTTTTTCTTGTTTCTGAGAAGATTTTTGATGAAGAACCGGAGGCAGATGGGGCCGATGTTGAAGGTGATAAGCTGTCTACATTTGTTTTAAGATTGCTTGTTTTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAATCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCCTGCGCAACTTCCAGCGATGAGCTAGTCCAGATTAGCGGAGGAAATGATGTGGTGAAGAGAGCTCTTGAACTTGTTTTTCAGCAGCTAATTGAAAATTCACCCCATGATAAGGATCCTGTCGCCTCAAGCATGACTGCACAGTCATCACATTCATCTGGACAATCTCGTTCTTGGGCTCATGATTATCTTCTGGGTAGTAGTTCTTTTAATGCTCATGCAGGCCCTTACTCTGTGCCTCGTGAAGTTGGCAACTTTCATTCCAGTACACCGTCTCTTGCTCCTAATAAACAGTATGAAACCAGCATTCCTGGTCGAATCAAACCTTCTCAAGAAATTTTAAGTTTTCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGTAGTAGTAAAGGCTCTTCAGCAAGAGACAGGCTGTGACATCAAAGTTATTGAAAGTGCCTTGGACCCAGACGATCGCATTATACTTGTAACTGGTCCTGCGAATCCAGATGACAGAATATCACCTGTACAAGATGCTGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGTACCAGACAGCAAGGAGCAGAACATGGTGGCTAGGTTTCTTGTTTACTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGGTCCCAAAGTGTGTTGGTGAAGATGAAGAAATGGTCCAGATAAATGGAGATCCTGAAACAGTTCAAGATGCTATGTTGCAGATTACTACTCGGCTGAGGCAGCATTTTTTCCGTGATGCATTTCCATCAGTTAATAATCATCCAAATCCTGCATTTGTTGATAGACTTCCTTCATTTCCTTCGTATTTTGGAAGGAGGGAATTATCACCTCCAGGAATCTATTCAAATTTAGGACCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCTTCACTTAGTGATTTGCGAGATGATCGACCTGCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGTCTAGTTGAAGGTGGTGTTGGCTTGCCAGACTTTACAGGAGCCCATCATAGGAGAATCGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGCTGTTCCTCGAGACCTTGTCCCCGTTATTTGTGGAGAGAATGGTGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTACGATTACTGAGCCAAAGCAAGGAGCTGTTGAAACTGTGATTATCATTTCTGGAACGCCTGAGCAAACCCATGCGGCTCAGAGTCTTATTCAAGCTTTTGTAATCAGCGAGACGGAGTCTAGTTGA 2091 43.04 MSAPLTPSKRSRDRNIVKSNGKGKWQKTSGSRSHKQSFKLSPGYAVFRVLFPVSRIDSLAGGDGDGDVLSKISEETGVEIRVEDTIPGCDERIVVIGGSNQETEVNPEEKRKEDNKNSEVEENEGDNAEWTKKEDKVSLPGEESKQKEVPYLQLRKALFLVSEKIFDEEPEADGADVEGDKLSTFVLRLLVFSSQVGCLLGKGGSVIKQMSSDSGAQIRILPRDKLPPCATSSDELVQISGGNDVVKRALELVFQQLIENSPHDKDPVASSMTAQSSHSSGQSRSWAHDYLLGSSSFNAHAGPYSVPREVGNFHSSTPSLAPNKQYETSIPGRIKPSQEILSFRLLCPSERVGNVIGKGGVVVKALQQETGCDIKVIESALDPDDRIILVTGPANPDDRISPVQDAVFRVQARIVKAVPDSKEQNMVARFLVYSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQVPKCVGEDEEMVQINGDPETVQDAMLQITTRLRQHFFRDAFPSVNNHPNPAFVDRLPSFPSYFGRRELSPPGIYSNLGPSFHKFDALSGIPSLSDLRDDRPAFLHRPGAPLLSDRKPWSSQGLVEGGVGLPDFTGAHHRRIAGFGGGNNPAIITSTTVEVAVPRDLVPVICGENGECLKQIRQISDAKITITEPKQGAVETVIIISGTPEQTHAAQSLIQAFVISETESS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2904444 2909630 - CmaCh09G006130.1 Cma09g00613 300618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00613 696 CDD PCBP_like_KH 186 254 - -
Cma09g00613 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 41 101 IPR036612 GO:0003723
Cma09g00613 696 MobiDBLite consensus disorder prediction 96 144 - -
Cma09g00613 696 MobiDBLite consensus disorder prediction 1 38 - -
Cma09g00613 696 MobiDBLite consensus disorder prediction 104 143 - -
Cma09g00613 696 MobiDBLite consensus disorder prediction 263 282 - -
Cma09g00613 696 SMART kh_6 183 258 IPR004087 GO:0003676
Cma09g00613 696 SMART kh_6 43 115 IPR004087 GO:0003676
Cma09g00613 696 SMART kh_6 424 499 IPR004087 GO:0003676
Cma09g00613 696 SMART kh_6 620 690 IPR004087 GO:0003676
Cma09g00613 696 SMART kh_6 339 419 IPR004087 GO:0003676
Cma09g00613 696 ProSiteProfiles Type-1 KH domain profile. 184 253 - -
Cma09g00613 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 174 259 IPR036612 GO:0003723
Cma09g00613 696 Gene3D K Homology domain, type 1 182 261 IPR036612 GO:0003723
Cma09g00613 696 Gene3D K Homology domain, type 1 422 502 IPR036612 GO:0003723
Cma09g00613 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 618 691 IPR036612 GO:0003723
Cma09g00613 696 Gene3D K Homology domain, type 1 340 416 IPR036612 GO:0003723
Cma09g00613 696 CDD PCBP_like_KH 427 495 - -
Cma09g00613 696 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 560 - -
Cma09g00613 696 Gene3D K Homology domain, type 1 45 105 IPR036612 GO:0003723
Cma09g00613 696 Gene3D K Homology domain, type 1 619 692 IPR036612 GO:0003723
Cma09g00613 696 ProSiteProfiles Type-1 KH domain profile. 340 407 - -
Cma09g00613 696 MobiDBLite consensus disorder prediction 266 282 - -
Cma09g00613 696 Pfam KH domain 623 686 IPR004088 GO:0003723
Cma09g00613 696 Pfam KH domain 187 253 IPR004088 GO:0003723
Cma09g00613 696 Pfam KH domain 343 394 IPR004088 GO:0003723
Cma09g00613 696 Pfam KH domain 428 494 IPR004088 GO:0003723
Cma09g00613 696 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 560 - -
Cma09g00613 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 420 505 IPR036612 GO:0003723
Cma09g00613 696 MobiDBLite consensus disorder prediction 21 38 - -
Cma09g00613 696 CDD PCBP_like_KH 342 411 - -
Cma09g00613 696 ProSiteProfiles Type-1 KH domain profile. 425 494 - -
Cma09g00613 696 ProSiteProfiles Type-1 KH domain profile. 621 685 - -
Cma09g00613 696 CDD KH-I 623 686 - -
Cma09g00613 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 342 416 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00613 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1152.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00613 Cma-Chr9:2904444 Cma11g01673 Cma-Chr11:11001638 1.86E-91 dispersed
Cma01g01452 Cma-Chr1:10209014 Cma09g00613 Cma-Chr9:2904444 2.74E-18 transposed
Cma01g01451 Cma-Chr1:10207824 Cma09g00613 Cma-Chr9:2904444 1.40E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00613 Cma_Chr09 FPKM 8.353541 8.903267 10.310291 10.130619 11.981226 10.798141 11.686509 15.444793 14.372674 16.39583