Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00617 ATGGATCCCTGCCAATTTGTGCGACTCACCGTCGGGAATCTGGCTCTTAAGGTTCCGGTGGCGTCTAAGCCGGCACGTTCGGTTGTTCATCCTTCTTCGTCTCCTTGCTTTTGTAAAATCAAGTTTAAGAAATTACAGGTGCAAACAGCTGTTGTACCGTTTATTCAACGGGATAATCAGTTTCCCGATGGGCAGGTTCAGTCCACGGCGGCAACTTTTCATCTTAGTAAGTTTGATCTCGCCAAGCTCGCTGGAAAATCTTTATTCGCTTCGAAACCGTGCCTCAAAATTTCAATCTACAGCGGGCGGAGAGGCACGACCTGTGGCGTCGACTCCGGAAGGCTCTTGGGTAAAGTGTCTGTACCTTTGGATCTGGCGGGAACTGAAACTAGGGCAACAGTGTTTCACAATGGGTGGATTTCAGTGGGGAAAGAGTCCAAGGATTCTTGTGCGCAATTCCATTTGAATGTGAAAGCCGAACCCGACCCGAGATTCGTGTTTCAGTTCGACGGCGAGCCCGAATGTAGTCCACAGGTGTTTCAGATTCAGGGCAACATCAGGCAACCCGTATTCACCTGCAAGTTCAGCTTCAGAACGGGCGACCGGGCTCAAAGATCCAGATCATTGCCTACAGAATCAAGCATTTCAAGGGGGTGGCTTAGCTCGTTCGGAAGCGAAAGGGAGCGCCCAGGAAAAGAGCGGAAGGGTTGGTCAATCACCGTCCACGACCTTTCCGGTTCACCCGTCGCCGCAGCTTCAATGGTCACACCATTCGTTGCGTCGCCGGGTTCCGACAGAGTCAGCCGGTCCAACCCCGGTTCATGGCTGATTCTTCGACCCGGAGACGGCACATGGAAGCCATGGGGCCGGCTCGAGGCTTGGCGTGAGCGAGGCGGATCAGACGGTTTAGGGTACCGGTTCGAGCTGATTCCGGACACGAACGGTGGGATGAGCGCGGCGGGGATTGTTCTGGCAGAGTCTGCTCTGAACATGAACAAGGGGGGGAAGTTCGTGATCGACTTGGGTGGAAGCTCGAACGGGAGGTCGACGCCGGCGAATCCGACGTCGCCGGCATGCAGCCCGAGGAGCAGTGGAGACTATGGGTACGGACTATGGCCGTACTGCGTGTATAGAGGGTTTGTGATGGGGGCAAGCGTGGAAGGGGAAGGGAAATGCAGCAAGCCGAGAGTGGAAGTGAGCGTGCAGCACGTGAACTGCACAGAAGACGCGGCCGCATTCGTGGCATTGGCAGCGGCCATCGATCTTAGCATGGACGCTTGCAGGCTGTTCTCTCAGAAGCTGAGGAAGGAACTGTGTCAGCCATTGGATCTTGTTGCTTGA 1341 54.96 MDPCQFVRLTVGNLALKVPVASKPARSVVHPSSSPCFCKIKFKKLQVQTAVVPFIQRDNQFPDGQVQSTAATFHLSKFDLAKLAGKSLFASKPCLKISIYSGRRGTTCGVDSGRLLGKVSVPLDLAGTETRATVFHNGWISVGKESKDSCAQFHLNVKAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFTCKFSFRTGDRAQRSRSLPTESSISRGWLSSFGSERERPGKERKGWSITVHDLSGSPVAAASMVTPFVASPGSDRVSRSNPGSWLILRPGDGTWKPWGRLEAWRERGGSDGLGYRFELIPDTNGGMSAAGIVLAESALNMNKGGKFVIDLGGSSNGRSTPANPTSPACSPRSSGDYGYGLWPYCVYRGFVMGASVEGEGKCSKPRVEVSVQHVNCTEDAAAFVALAAAIDLSMDACRLFSQKLRKELCQPLDLVA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2913082 2915252 + CmaCh09G006170.1 Cma09g00617 300622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00617 446 Pfam Protein of unknown function (DUF1005) 1 439 IPR010410 -
Cma09g00617 446 PANTHER OS07G0133500 PROTEIN 1 440 - -
Cma09g00617 446 PANTHER OS08G0163500 PROTEIN 1 440 IPR010410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00617 - - - csv:101220969 857.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01450 Cma09g00617 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00423 Cma-Chr4:2172188 Cma09g00617 Cma-Chr9:2913082 6.47E-154 dispersed
Cma08g00984 Cma-Chr8:6152960 Cma09g00617 Cma-Chr9:2913082 4.07E-106 dispersed
Cma09g00617 Cma-Chr9:2913082 Cma16g00297 Cma-Chr16:1393626 4.56E-156 dispersed
Cma12g01273 Cma-Chr12:9912086 Cma09g00617 Cma-Chr9:2913082 2.93E-155 transposed
Cma01g01450 Cma-Chr1:10201118 Cma09g00617 Cma-Chr9:2913082 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g584 Blo01g01782 . . Bda03g00441 Bpe02g00159 Bpe04g00407 Bma04g00418 Bma01g02567 . . Cma01g01450 Cma09g00617 . . . Cpe06g00476 . . . . . . . . . . . . . . . Cone4ag1261 Cone7ag0882 Cone17ag1146 Cone20ag0581 Lsi04g02313 Csa03g04531 Chy04g00172 . . . Bda11g00817 . . . . . Sed12g1374 Cmo01g01503 Cmo09g00602 . . . Car09g00547 . Cpe02g00499 Bhi09g02549 Tan01g3897 Cmetu04g0381 . Hepe01g2202 Mch11g0751 . Cla11g01463 Cam11g1515 Cec11g1554 Cco11g1549 Clacu11g1679 Cmu11g1496 Cre11g1917 . . . Cme04g00199
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004559 2 1 1 2 2 0 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00617 Cma_Chr09 FPKM 6.095134 8.021858 4.708909 4.289933 8.440859 7.028886 7.184031 2.481143 2.315823 2.950733