Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00623 ATGCCACGTGGCAACACATTCGAATTCGACCGTTGCCGCGCTCAAGACCTTTTTCTTACACCCCCATTTGGCGTCCTTCGTCTTCCTCGTTTCTCTCTGTCTCTTCTCTCGCCATTCGATCTGCTCTCTGTTCTCTCCCTCCCTTTATTTCAGATGGCGGTCGCTGCAGAAAACCAACCCCAGGAGAAGATCACTACCACGGAGGCCTCTGCTGTCGAAAAGAGAAGATGGACGCTTAACGACTTTGACATCGGGAAGCCTCTCGGAAGAGGGAAATTCGGTCATGTGTATCTGGCTAGGGAAAAGAGGAGTAATCAAATTGTGGCGCTGAAAGTTTTATTCAAGAGTCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATACTTCTACGATCAAAAACGGATTTATTTGGTATTGGAATATGCTCCCAAAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGTGCTGCTACTTACATTGCATCGTTGGCTCGAGCACTCATTTACTGTCATGGAAAACACGTAATCCACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCTCAGGGTGAACTCAAGATCGCTGATTTTGGATGGTCGGTGCACACGTTTAACCGTAGGCGTACTATGTGTGGGACACTGGATTATCTGTCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGTCTTGGTGTCCTGTGCTATGAGTTTCTCTATGGGGTACCCCCGTTTGAGGCTAAGGAACACTCTGACACGTACAGGAGAATTATGCAAGTTGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGACCTTATCAGTCAGATGCTTGTCAAGGAGTGCTCTCAACGGCTGCCACTACACAAAGTTCTCGAACACCCTTGGATTGTCCAAAATTCAGAGCCCTCTGGTGTATATAAGAGTTGA 1038 46.53 MPRGNTFEFDRCRAQDLFLTPPFGVLRLPRFSLSLLSPFDLLSVLSLPLFQMAVAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNQIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPKGELYKELQKCKYFSERRAATYIASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLSPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIMQVDLKFPPRPIISSTAKDLISQMLVKECSQRLPLHKVLEHPWIVQNSEPSGVYKS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2930397 2934506 + CmaCh09G006230.1 Cma09g00623 300628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00623 345 SUPERFAMILY Protein kinase-like (PK-like) 69 337 IPR011009 -
Cma09g00623 345 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Cma09g00623 345 ProSiteProfiles Protein kinase domain profile. 82 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00623 345 Gene3D Phosphorylase Kinase; domain 1 69 165 - -
Cma09g00623 345 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 52 344 IPR030616 GO:0004672
Cma09g00623 345 Pfam Protein kinase domain 84 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00623 345 Gene3D Transferase(Phosphotransferase) domain 1 166 343 - -
Cma09g00623 345 SMART serkin_6 82 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00623 345 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 52 344 - -
Cma09g00623 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cma09g00623 345 CDD STKc_Aurora 81 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00623 K08850 AURKX; aurora kinase, other [EC:2.7.11.1] - csv:101219866 584.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01444 Cma09g00623 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00623 Cma-Chr9:2930397 Cma03g01424 Cma-Chr3:8903484 3.52E-51 dispersed
Cma06g01122 Cma-Chr6:7551507 Cma09g00623 Cma-Chr9:2930397 1.51E-134 transposed
Cma01g01444 Cma-Chr1:10169837 Cma09g00623 Cma-Chr9:2930397 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g37 . Blo12g01056 . . . . . . . . Cma01g01444 . Car09g00552 . . . Cpe06g00481 . . . . . . . . . . . . . . . . . Cone20ag0325 Lsi04g02318 Csa03g04537 Chy04g00166 . . . . Bda13g01320 . . . Bma02g00077 . Cmo01g01498 . Cma09g00623 . . . . Cpe02g00504 Bhi09g02557 . . . . Mch11g0757 . . . . . . . . . . . Cme04g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68799 PF00069 Pkinase 5.40E-74 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00623 Cma_Chr09 FPKM 9.896917 13.001058 4.198389 3.64234 19.37413 20.320709 20.345785 4.528408 4.206487 3.844765