Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00626 ATGAGCAGGCGTCCTGAGCTTCTTGACTTGATTTCTGGGGACAGGGAATGGGAGTTGAATAGAATTGGTGTTGGGAGTTCTGTTAGTGAGAACAATAAGCTTGAGCTGAGACTTGGATTGCCTGGAGAAGAGAGGCTTACAGAAGGAAGTAGCTGCTTGAATTTTAGCCATGAAAGTGATGAATCCCATCTCCTTTCTGCTAAGCTCTTTCCTTCTTGTTTGAACATTAGAAGCAACAAAAGGGCGCTTTGTGATGAATTCCGACCCCACAAGCTGGTTTTTTCTGAGAAAACAGCTGAGAAGGTGGCTCCTCTCATTCACTATCTTGGTGCTTCCTTACCATCTTCAGCTTTTCAGAGGGAAGCCCAGAAGCTATCTCAACCATCGCAGTCGTTATATTTAGAACATTTGTTGATGCCTCAGAAATTGGACTTGGTGTCAGAGGAGCCATCAAAGACATGCAGCTTAAAAACAGCTGAGTTTCCTTACTCAACTGAGAAATCATGTCTCAATAATGGGTCAGTTCCTGCAGAATCATCTGAACCTAAACACCAGGACAAAAGGGCTTCAGTTGCATCAGCCGTTGGTTGGCCTCCCATCCGTTCTTTCAGGAAGAACTTTTCTGGCCCCCGCTCTTCGAAGCCTAACTCTCTTGTGTTGTCAAAAGAAGCTGTGCAGGATGAGAATGGCTCAAAATTATCTCACTGTTCCAACGGACAAATGTTTGTAAAAGTTTGTATGGATGGGATTCCCATCGGAAGAAAACTGAATCTCCAAGCCTATAATGGTTATGATCAACTGTCAGCTGGCATAGACGAACTCTTCCACTGTCTTCTTGCAGCACAGAGAAACTATCAAGCAGCTGAAGATGGGAGAAAGTTGGAGGAAACAACCTCGTTATCTGATTCCAAACACGAAAACGGGCTGTACACTCTAGTTTACTATGATAATGAAGGGGACAGGATGCTTGTTGGTGATGTCCCATGGAACATGTTTGTTTCCACTGTGAAGAGGCTACGTGTGTTAAGGAGTGCTGTTGTTGCCACTGAAATGAACAATTTTGAGCAGAAATGGCAACAGTTTATGCCAAAGAGTGATACCAAGTTAGGATTTTCCCATATATGTTTTCATTTTACTAGCTGCAACCTGCTTGGGTGGGCGCAATCACATTCTTCCAACATCCTCGCAAACAAAGCAGGCAATAGCCAGAGCCGGCACGACAGCGCCACTCTGTATCTCTTATCCTACATGCTTCTCCGCGCGTCCCCTCTTCTTCGCGCCTCCCACCGTCCATTCTCCTCTGGGGTTCACATGGCGCTAGCTGCCCATGTCCTTCCCAACCATCAAAGTTTCCCTTCATGGCGATCTTCTTCGCACTTGCCGCCTGTTTGTCAAGCGAATGGCTACGACCGCATTTCGCCCAAATTAACTTTTTCACAATTTGTTCGGAGTTTCTACGTCTTGTCGGGAACATACAATAAGGTACAAAGGCCTTGTGGAAGGATTTTCTGTGGGCAAAGAGAGTATAGAAAGGTGAGGAGACGAGTCCCAAAAACCAAGAAAAAGGAACTAGAGCTGAACGTCAGTATCTGTATTGAAGAAAAGTTGCCGGACGACCCAGAACTTTTGAGTATTGCAGAAATGCTTCGTTTGAATGTTCCTAAGGCTCTGAAGTTAGCTTTCAACAATTTAAAGGATTCACAATACAAAACTCGAGATAGTTCAATAAATGATGTTGGTTTATTTGAAAGTGTTGAGATGTCCGTGCTACTTTGTAACGACGAGTTTATTTGTAAACTTAACAAAGAATGGAGGGACGAGGATCATGCCACTGATGTCCTGTCCATGTCACAGCATGTCCCAGAACTGAAGCTGCCAATTCTTATGTTAGGTGATATTGTCATTTCTGTTGAGACTGCTGCGAGGCAGGCGGAGGAACGGGGACACACACTCCTTGATGAAATTCGGATACTCCTTGTGCATGGATTGTTGCATCTTTTGGGATTTGATCATGAGATTAGTGAAGAGGCTGAAGTAGAAATGGAAAAGGAGGAGGAACTACTTTTGAAGAGTTTAGAGTGGAAAGGGAAAGGGCTGATTCAGAGTGCAATTGATGCTGAAACTAATTCAAACTCAGTTGCAGAAGTTTCAGATGACAGGAAAAAAGAAGGAAGTCTCCGATTTTACCGCCCAAGGTTCAGCTATATTTTCTGTGATATGGATGGTACATTGCTCAACAGTAAAAGTCAAATTACTCCAACAACTGTCAAGGCCCTGAAGGAGGCCTTGTCAAGAGGTGTGAAAGTTGTTATAGCTACTGGAAAGGCCCGCCCAGCAGTAATAAGCATTTTGGAGAAGGCAGGTTTAGCTGGAAAAGATGGTGTTGTGTCTGAATTTTCTCCAGGAGTTTTCTTACAGGGACTCCTTGTTTATGGCAGACAAGGCAAGGAAATTTATAGGCGGAACTTAGATCAAGATATCTGCAGAGAGGCATGTCTTTATTCTTTAGAGAAGAATGTTCCTCTGATTGCATTTGGTGAAGGCCGTTGCTTAACTCTATTTGATCATCCACTTACTGATGCATTGCACACTATATACCATGAGCCCAAGGCAGAGGTGATGTCCTCGGTTGATAATCTTTTGGCTGCAGCTGAAATACAGAAACTTCTTTTCTTGGACACTGCCGAGGGAGTTTCACGCATCCTTCGGCCATACTGGTCAGAGGCCTCAGGGGAACACGCCTCGGTTGTTCAGGCTGTACCAGAAATGCTCGAAATCGTCCCCTGTGGAACCTCGAAAGGTAGCGGAGTAAAATTGTTGCTCGATCATTTAGGAGTTTCTTCTGAGGAGGTAATGGCTATTGGAGATGGGGAAAATGACATTGAGATGCTGGAATTGGCATCTCTTGGAATTGCTATGAGCAATGGAGCAGAGAAAACAAAGGCTGTTGCTAACTTAATTGGTCCCAGCAATGATGAAGATGGTGTTGCAGAGGTTATATACAGATATGCATTCTAG 3018 44.23 MSRRPELLDLISGDREWELNRIGVGSSVSENNKLELRLGLPGEERLTEGSSCLNFSHESDESHLLSAKLFPSCLNIRSNKRALCDEFRPHKLVFSEKTAEKVAPLIHYLGASLPSSAFQREAQKLSQPSQSLYLEHLLMPQKLDLVSEEPSKTCSLKTAEFPYSTEKSCLNNGSVPAESSEPKHQDKRASVASAVGWPPIRSFRKNFSGPRSSKPNSLVLSKEAVQDENGSKLSHCSNGQMFVKVCMDGIPIGRKLNLQAYNGYDQLSAGIDELFHCLLAAQRNYQAAEDGRKLEETTSLSDSKHENGLYTLVYYDNEGDRMLVGDVPWNMFVSTVKRLRVLRSAVVATEMNNFEQKWQQFMPKSDTKLGFSHICFHFTSCNLLGWAQSHSSNILANKAGNSQSRHDSATLYLLSYMLLRASPLLRASHRPFSSGVHMALAAHVLPNHQSFPSWRSSSHLPPVCQANGYDRISPKLTFSQFVRSFYVLSGTYNKVQRPCGRIFCGQREYRKVRRRVPKTKKKELELNVSICIEEKLPDDPELLSIAEMLRLNVPKALKLAFNNLKDSQYKTRDSSINDVGLFESVEMSVLLCNDEFICKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILLVHGLLHLLGFDHEISEEAEVEMEKEEELLLKSLEWKGKGLIQSAIDAETNSNSVAEVSDDRKKEGSLRFYRPRFSYIFCDMDGTLLNSKSQITPTTVKALKEALSRGVKVVIATGKARPAVISILEKAGLAGKDGVVSEFSPGVFLQGLLVYGRQGKEIYRRNLDQDICREACLYSLEKNVPLIAFGEGRCLTLFDHPLTDALHTIYHEPKAEVMSSVDNLLAAAEIQKLLFLDTAEGVSRILRPYWSEASGEHASVVQAVPEMLEIVPCGTSKGSGVKLLLDHLGVSSEEVMAIGDGENDIEMLELASLGIAMSNGAEKTKAVANLIGPSNDEDGVAEVIYRYAF 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2935584 2946842 - CmaCh09G006260.1 Cma09g00626 300631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00626 1005 Hamap Endoribonuclease YbeY [ybeY]. 523 701 IPR002036 GO:0004222|GO:0006364
Cma09g00626 1005 ProSitePatterns Hypothetical cof family signature 2. 954 976 - -
Cma09g00626 1005 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 583 697 - -
Cma09g00626 1005 SFLD C2.B: Phosphomannomutase and Phosphatase Like 736 1004 - -
Cma09g00626 1005 Gene3D - 235 354 - -
Cma09g00626 1005 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 735 973 IPR006379 -
Cma09g00626 1005 Gene3D - 736 1000 IPR023214 -
Cma09g00626 1005 SFLD Haloacid Dehalogenase 736 1004 - -
Cma09g00626 1005 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 444 1005 IPR002036 GO:0004222|GO:0006364
Cma09g00626 1005 ProSitePatterns Hypothetical cof family signature 1. 735 746 - -
Cma09g00626 1005 SUPERFAMILY HAD-like 731 1003 IPR036412 -
Cma09g00626 1005 TIGRFAM Cof-subfamily: Cof-like hydrolase 735 1000 IPR000150 GO:0016787
Cma09g00626 1005 SUPERFAMILY CAD & PB1 domains 233 341 - -
Cma09g00626 1005 ProSitePatterns Uncharacterized protein family UPF0054 signature. 661 671 IPR020549 -
Cma09g00626 1005 ProSiteProfiles PB1 domain profile. 240 349 IPR000270 GO:0005515
Cma09g00626 1005 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 586 692 IPR002036 GO:0004222|GO:0006364
Cma09g00626 1005 CDD HAD_Pase 736 1002 - -
Cma09g00626 1005 Pfam haloacid dehalogenase-like hydrolase 736 1000 - -
Cma09g00626 1005 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 444 1005 - -
Cma09g00626 1005 Pfam AUX/IAA family 34 345 IPR033389 -
Cma09g00626 1005 Gene3D Metalloproteases ("zincins"), catalytic domain 557 698 IPR023091 GO:0004222
Cma09g00626 1005 Gene3D - 822 929 - -
Cma09g00626 1005 Pfam Endoribonuclease YbeY 582 691 IPR002036 GO:0004222|GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00626 - - - cmo:103503611 998.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00094 Cma-Chr1:428075 Cma09g00626 Cma-Chr9:2935584 1.20E-45 dispersed
Cma09g00626 Cma-Chr9:2935584 Cma14g01289 Cma-Chr14:10188113 2.32E-44 dispersed
Cma01g01443 Cma-Chr1:10162705 Cma09g00626 Cma-Chr9:2935584 1.84E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g30 . . . . . . . . . . . . Car09g00553 . . . Cpe06g00482 . . . . . . . . . . . . . . . . . . Lsi04g02320 Csa03g04539 Chy04g00164 . . . . . . . . . Sed12g1384 . . Cma09g00626 . . . . . Bhi09g02561 Tan01g3910 Cmetu04g0733 . Hepe01g2210 Mch11g0758 . . . . . . . . . . . Cme04g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009056 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35620 PF02309 AUX_IAA 1.30E-55 CL0072 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00626 Cma_Chr09 FPKM 6.505164 7.372026 11.513124 12.449506 16.206461 13.616535 16.466858 5.416545 6.321916 6.452969