Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00631 ATGATGGCTGTCACTTCCGCCTGCAAGGATTCTGCTACCAAGATCAGCAGCTTGGATAATGGGAAGTATGTTAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATTCGGGAGTGCCCAATTCTCTCCGACATCGAACTCAAGCAGATCAAAGTTTGGTTCCAAAACCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCCCGTTTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATCGACTTCTAATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGCGAGTCTGTGGTGACAAGTGGTCAGCAGAATTTGACTCCACCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTGTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCTGCTCGTGCATGTGGGCTTGTGGGTCTTGAACCCACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGAGATTGCCGTGCCGTTGATGTTCTAAATGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGCTACACATCGGTTTTGGAGGATGGCAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACCCAAAATGGTCCAAGCATGCCTCCAGTACAGAACTTTGTAAGAGCAGAAATGCTATCAAGTGGGTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCATGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGGCCTGCTGCTCTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTAAACGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCTATGAGCAACGCCGTGCTTTGTGCGAAAGCATCGATGCTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGTTCAGAATGGGCCGACAGCAGTATTGATGCCTACTCAGCTGCAGCAATTAAGACCGGCCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGATTATTCTTCCCTTGGCACAAACGTTTATGGAAGTTGTTAAATTCGAAAACGTGAGCCACTACAGAGACGATAAACTCATGCCTGGTGACATCTTCCTCCTCCAACTTTGCAACGGTGTGGACGAGAATACGGTTGGTACTTCTGCTGAACTCATCTTTGCTCCGATTGACGCCTCTTTTTCCGATGATGCACCGATTCTACCATCTGGCTTCCGCATCATTCCTCTCGATTCTGGCATGGATGCTTCAAGTCCATACCGCACGCTTGATCTTGCTTCGGCTCTTGACGTTGGACCTGCTGGGAATAGAGCTTCTGGAAACTGTGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGGAGCGTTATAGCATCTGTTCAGAGGGTGGCGCTGGCTCTTTCGCCTTCGAATTTCAGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACGCTTGCTCTTTGGATCTCTCAAAGCTATAGGTGCTTTATGGGCATGGAATTACTGAAAAATGAAGGACGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGCAGGCCTTGCCAAATTTCACATTTGCTAATCAATCTGGACTCGACATGCTCGAGACGACCTTGGTGGCTCTCCAAGACATTACTTTGGAGAAAATTTTTGATGATAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCACGGATAATGGAGCAGGGCTTCATTTGCCTTCAAGGGGGTATTTGCTTGTCAAGCATGGGAAGGGCAATATCCTACGAGAAAGCTGTGGCATGGAAGTCAGAACGTAGGAACATGACCATTAGAATAGATCAAATTTTCCTTTCAGTTTCCTCCCGTTCTAAGGCCCTGTCCTGTCAAGACATAATCAATGGAGCTGGACTGAAGCTGAAGCTGAAGAGAAGTTTGATGGCTCTTCTTGGCTCTAAAGCTATTCTCTCTGATGTGGGTCAGTGA 2625 46.51 MMAVTSACKDSATKISSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSDIELKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLSSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQIILPLAQTFMEVVKFENVSHYRDDKLMPGDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPYRTLDLASALDVGPAGNRASGNCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSVIASVQRVALALSPSNFSPHANLQTPAGAPEAQTLALWISQSYRCFMGMELLKNEGRESVLKSLWHHSDAVMCCSLQALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMEQGFICLQGGICLSSMGRAISYEKAVAWKSERRNMTIRIDQIFLSVSSRSKALSCQDIINGAGLKLKLKRSLMALLGSKAILSDVGQ 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2977089 2983313 - CmaCh09G006310.1 Cma09g00631 300636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00631 874 CDD homeodomain 22 82 IPR001356 GO:0003677
Cma09g00631 874 CDD START_ArGLABRA2_like 160 375 - -
Cma09g00631 874 Pfam START domain 166 374 IPR002913 GO:0008289
Cma09g00631 874 SMART START_1 165 375 IPR002913 GO:0008289
Cma09g00631 874 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 818 IPR044830 GO:0003700
Cma09g00631 874 SUPERFAMILY Bet v1-like 165 375 - -
Cma09g00631 874 Coils Coil 91 118 - -
Cma09g00631 874 CDD bZIP 74 113 - -
Cma09g00631 874 Gene3D - 200 376 IPR023393 -
Cma09g00631 874 SMART HOX_1 19 85 IPR001356 GO:0003677
Cma09g00631 874 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Cma09g00631 874 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Cma09g00631 874 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 818 - -
Cma09g00631 874 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Cma09g00631 874 Gene3D - 15 88 - -
Cma09g00631 874 Pfam MEKHLA domain 696 816 IPR013978 -
Cma09g00631 874 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00731 Cma-Chr8:4391594 Cma09g00631 Cma-Chr9:2977089 0 dispersed
Cma09g00631 Cma-Chr9:2977089 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma01g01439 Cma-Chr1:10124986 Cma09g00631 Cma-Chr9:2977089 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35621 PF01852 START 5.20E-53 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00631 K09338 - csv:101218438 1579.69