Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00635 ATGTCAGCAACACAACCATCTCAAATCACCCAACCATCCTCCTCTGACACCACTTTCAATTCCTCCAACAACGCCCAATCCAACCCCAACAACAAGCGCGTTCGTGATTCCAGCAAGCACCCACTCTACCGAGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTGGGAACCTTCCCCACCCCAGAGATGGCCGCTAGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCTACTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCCGTCTCATTCGCCCCTCGCGACGTTCAAGCCGCCGCTGCCAAGGCCGCCCACATGGACCCTTTTCAATATTCCACCGACGACTCCGACGAGCTCAGCGAAATCGTCAAGTTGCCTAGTCTCAGCACCAATTACCTTAATAACGAGTTCGTCCTCATGGACTCCACAGATGGCTGGGTTTACCCACCGCCATGGTTACGAACCATGGACGATTGCAGCTACTACAACAACAATAACAACAACAACATTATCGACGAGATGGGAATTGGAGACAGTAATTTCTTATGGGATTATTAA 618 52.59 MSATQPSQITQPSSSDTTFNSSNNAQSNPNNKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSATLNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPFQYSTDDSDELSEIVKLPSLSTNYLNNEFVLMDSTDGWVYPPPWLRTMDDCSYYNNNNNNNIIDEMGIGDSNFLWDY 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3002095 3002712 - CmaCh09G006350.1 Cma09g00635 300640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00635 205 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Cma09g00635 205 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Cma09g00635 205 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Cma09g00635 205 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Cma09g00635 205 MobiDBLite consensus disorder prediction 1 41 - -
Cma09g00635 205 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Cma09g00635 205 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Cma09g00635 205 MobiDBLite consensus disorder prediction 1 32 - -
Cma09g00635 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 135 196 - -
Cma09g00635 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 130 - -
Cma09g00635 205 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Cma09g00635 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 130 - -
Cma09g00635 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 135 196 - -
Cma09g00635 205 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00099 Cma-Chr1:455264 Cma09g00635 Cma-Chr9:3002095 1.74E-49 dispersed
Cma05g00594 Cma-Chr5:2958701 Cma09g00635 Cma-Chr9:3002095 1.28E-07 dispersed
Cma05g01358 Cma-Chr5:10234374 Cma09g00635 Cma-Chr9:3002095 6.13E-52 dispersed
Cma08g00723 Cma-Chr8:4366261 Cma09g00635 Cma-Chr9:3002095 2.38E-52 dispersed
Cma09g00635 Cma-Chr9:3002095 Cma10g00659 Cma-Chr10:2980345 1.33E-59 dispersed
Cma14g02148 Cma-Chr14:14707804 Cma09g00635 Cma-Chr9:3002095 8.03E-43 dispersed
Cma08g00154 Cma-Chr8:842741 Cma09g00635 Cma-Chr9:3002095 4.04E-40 transposed
Cma01g01437 Cma-Chr1:10106811 Cma09g00635 Cma-Chr9:3002095 2.05E-84 wgd
Cma12g00253 Cma-Chr12:1285060 Cma09g00635 Cma-Chr9:3002095 4.37E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35623 PF00847 AP2 4.80E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00635 K09286 - csv:101217333 259.996