Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma09g00635 | ATGTCAGCAACACAACCATCTCAAATCACCCAACCATCCTCCTCTGACACCACTTTCAATTCCTCCAACAACGCCCAATCCAACCCCAACAACAAGCGCGTTCGTGATTCCAGCAAGCACCCACTCTACCGAGGCGTAAGAATGCGCGCTTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTGGGAACCTTCCCCACCCCAGAGATGGCCGCTAGAGCCCACGACGTTGCTGCCTTGTCCATCAAAGGTAATTCCGCTACTCTCAACTTCCCTGAACTCGCTCACTCCCTTCCCCGCCCCGTCTCATTCGCCCCTCGCGACGTTCAAGCCGCCGCTGCCAAGGCCGCCCACATGGACCCTTTTCAATATTCCACCGACGACTCCGACGAGCTCAGCGAAATCGTCAAGTTGCCTAGTCTCAGCACCAATTACCTTAATAACGAGTTCGTCCTCATGGACTCCACAGATGGCTGGGTTTACCCACCGCCATGGTTACGAACCATGGACGATTGCAGCTACTACAACAACAATAACAACAACAACATTATCGACGAGATGGGAATTGGAGACAGTAATTTCTTATGGGATTATTAA | 618 | 52.59 | MSATQPSQITQPSSSDTTFNSSNNAQSNPNNKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSATLNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPFQYSTDDSDELSEIVKLPSLSTNYLNNEFVLMDSTDGWVYPPPWLRTMDDCSYYNNNNNNNIIDEMGIGDSNFLWDY | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3002095 | 3002712 | - | CmaCh09G006350.1 | Cma09g00635 | 300640 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma09g00635 | 205 | Gene3D | AP2/ERF domain | 42 | 100 | IPR036955 | GO:0003700|GO:0006355 | |
Cma09g00635 | 205 | PRINTS | Ethylene responsive element binding protein signature | 43 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00635 | 205 | PRINTS | Ethylene responsive element binding protein signature | 65 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00635 | 205 | SMART | rav1_2 | 42 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00635 | 205 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cma09g00635 | 205 | CDD | AP2 | 41 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00635 | 205 | SUPERFAMILY | DNA-binding domain | 42 | 100 | IPR016177 | GO:0003677 | |
Cma09g00635 | 205 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma09g00635 | 205 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 135 | 196 | - | - | |
Cma09g00635 | 205 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 9 | 130 | - | - | |
Cma09g00635 | 205 | ProSiteProfiles | AP2/ERF domain profile. | 42 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Cma09g00635 | 205 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 9 | 130 | - | - | |
Cma09g00635 | 205 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 135 | 196 | - | - | |
Cma09g00635 | 205 | Pfam | AP2 domain | 41 | 91 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00099 | Cma-Chr1:455264 | Cma09g00635 | Cma-Chr9:3002095 | 1.74E-49 | dispersed | |
Cma05g00594 | Cma-Chr5:2958701 | Cma09g00635 | Cma-Chr9:3002095 | 1.28E-07 | dispersed | |
Cma05g01358 | Cma-Chr5:10234374 | Cma09g00635 | Cma-Chr9:3002095 | 6.13E-52 | dispersed | |
Cma08g00723 | Cma-Chr8:4366261 | Cma09g00635 | Cma-Chr9:3002095 | 2.38E-52 | dispersed | |
Cma09g00635 | Cma-Chr9:3002095 | Cma10g00659 | Cma-Chr10:2980345 | 1.33E-59 | dispersed | |
Cma14g02148 | Cma-Chr14:14707804 | Cma09g00635 | Cma-Chr9:3002095 | 8.03E-43 | dispersed | |
Cma08g00154 | Cma-Chr8:842741 | Cma09g00635 | Cma-Chr9:3002095 | 4.04E-40 | transposed | |
Cma01g01437 | Cma-Chr1:10106811 | Cma09g00635 | Cma-Chr9:3002095 | 2.05E-84 | wgd | |
Cma12g00253 | Cma-Chr12:1285060 | Cma09g00635 | Cma-Chr9:3002095 | 4.37E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35623 | PF00847 | AP2 | 4.80E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma09g00635 | K09286 | - | csv:101217333 | 259.996 |