Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00644 ATGGCCTCTTACGATTACGAGGACTCAGGTGCCAACTATGATGACCCCCGGCACGCGACGGCGCCATCTCCGGCTGGCCAAGATATTGGCTATGACCCCAATTTCGTTCCAGATTCCGTCAAGTCCTTTGTCGTTCATTTATACCGGCATATCCGTGAGAAGAATGTATACGAAACCCATCAAATGTATGAAACCTCCTTTCAGTCCTTATCGGACCGCCTATTCAAGGACACACCTTGGCCGTCAGTGGATGCCGTAGCTCATTTTGTGGATAATGACCATGTTTTCTGCCTGCTTTACCGTGAGATGTGGTTCCGCCATCTCTATGCGAGGTTATCACCAACTTTGAAGCAGAGGATTGACTCGTGGGATAATTATTGTAGCCTATTTCAGGTGGTTTTGCACGGAGTCGTTAATATGCAATTGCCTAACCAGTGGCTATGGGATATGGTGGATGAGTTTGTTTATCAGTTCCAGAGTTTCTGCCAATACCGGGCCAAGATGAAGACTAAGACCGAGCAGGAAATTGCTCTCCTGAGAAAATTTGATCAGGCGTGGAATGTATATGGTGTCCTCAACTACTTGCAAGCATTTGTGGAGAAATCCTCAATCATTCATATTCTTGAGGAGGAGAAAGAAGGTCTAGAACAATTTACTGCCACTGATGGGTATGACTATAGTGGTGGAAGTAGTAATGTTTTGAAGGTGTTGGGATATTTCAGCATGGTTGGATTACTTCGGGTTCATTGCCTGTTAGGCGATTATCACACTGGTTTGAAGTGCTTACTCCCAATTGACATAAGCCAGCAAGGAGTTTTTACTAGTGTGATTGGAAGCCATATTACTACTATATACCATTACGGGTTTGCCAACCTAATGTTGCGGAGGTACGTGGACGCTATTCATGAATTCAACCGAATTCTCCTGTATATTTATAAAACCAAGCAATACCACCAGAAATCTCCTCAGTATGAGCAGATTCTTAAGAAGAACGAGCAAATGTATGCCTTGTTGGCCATATGTGTTTCACTCTGTCCACAAGTGAAGCTTGTTGATGAAACTGTGAACTCTCAGTTGCGGGAGAAGTATGGTGAAAAGATGATAAGGATGCAAAGGTATGATGAGGAAGCTTTTGCCATCTATGACGAGCTTTTCTCATATGCTTGTCCGAAGTTCATCACTCCATCTGCTCCTAGTTTTGAGGAGCCTCTAGTAAACTACAACCAGGATGCCTATAGACTTCAATTGAAACTATTCCTTTATGAAGTAAAGCAACAACAATTACTGTCTGGCATCCGGACCTTCTTGAAAGTGTATTCCTCCATCTCCCTTGGGCAGCTTGCTACTTACATGGAAATGGATGAATCCACACTAAGGACTATTCTGTTGACATACAAGCATAAAACCCATGCCGTTGATAGTGTTGGAAAAATTATGTCTAATGCAGACGTGGATTTCTACATTGACGATGACATCATTCATGTTGTGGAATCTAAGCCTGTAAATCGCTATGGAGATTTCTTCTTGCGGCAAATTGTTAAAAGTGAAACTGGACTGAGTTTTCTCCTTGAGAGTTTTGTTGAAGTGGCTTTTTGGACGAAGTTTTTGCCAGGAACGGATTTCTCTCCGTCGTTGACTTCCGATTCAACAATGGAGAAGCTCGGAGTTCCAAGCATGAAGAGGTTGAACCAGTTGAATTCACTCCCTGGTCTGGCACCAGGAACTACAAAAACGTTCTCATTCTCTTCACGTTCCGTTCCGGACTCTGCCTCATCGGGAAGTTTTGTAAATTTGAAGATAGCAGCAGAGAAATTGATGAAAGAGCAAGCTGCTGTAAAGACTGATCTGGAAATGGCGAATGCGAAATTGAGGAAATCAGTGGAGCACACACGTAATTTAGAGGATAAAGTGCAGAATGCCTTGAATGAAAATGCCAAACTCCAGGTGAAGCAGAAAGAAGACGAGAAATTGTGGAAGGGATTGGAATTGAAATTCTCTTCGGCCAAGACACTGAGTGATCAGCTCACCGAAACATTGCAGCATCTAGCCAGTCAGGTTCAGGATGCTGAGAAAGACAAGGAGGTTTTAGAAGCCAAATTATCTGCAAGTTCTACAGCTGTTGATGGGTTAAACCAACAAATGCAGGAGTTATCAATAAAAGTAGAGTCTGTAGAAGAAACACTAAGAAATCGTGAGAAGGAGCTGGCGGAGCTCAAAATTGAGAAAGAGGAAATTTGTAAATTGTACAAAAAAGAACAGCAGGGAACTGCAAATCTGATCGAGGAAAAAGACTCTATAACCAAGACATTTGAGGACACACTTATGCAGAACAGGTTGATCATAGAGGGCTTGAACTCTAAACTGGAAGAAGCACAATTTGTCTCAAACTCGAAAGAAGATAAAATTACTAGTTTGATAGCCTTACGAGATGACTTGCAGAAGGAAAAGAGTGATTTGGAAATGCATAATGATGAGGTTCATAAGAAATTAGATGCGTCACTCATGGAGATCAAAAACCTTGAAAACCTCGTCAATTTATTGGTTGAACAGCTGGTTGAACTGGATCGTCATAACTCAACTTTTTTAGAGAAATTTAATCAGCTAAACCTTCTAAATGACTCTTGCTTTAAGCTAGCCAAATTGGAGAGGAATGTTGCTTCAGAACTGGCCCAAAACCAATACAACAAGCTCTATGACAACTTGATTTGTATAACATCAGAAAAAAGTGCACTCAAATTGATAAATGTTGAATCACAGGAAAAGGTAGATGAACTTCAGAAAGTTCAGGAATCGCTCATGGCACAGCATTCAGAAGAATCTCGTTTAGCAGGAGAGAGAATTCAAAAGTTGGAGTCTGAAGTAGAAACTCTTGTTTCAGAAAAGACCGGGGCAGAATCATTAGTTTCCAAGTTAGGGGAGGAAATTGTTACTTTGTCAGAAAGCTCAAGATCCTCAGAGAGTAAAATGCAAGATTTGTTGCAGAAGATTACCGCACTAGAAATTGAGAATCGGTGTAACGTAGAAAAATTGGAGAAAGAGTTACACGACAAAACAGAAGAAATGGATACTTTGATGAAGGAGAGCGAAAACCATAAAAAACATGCAGATATGCAGGCAGTAGAGAGCGATCAACTTCGCACTATTTTGAAGGAAAATGAAGAATTGATTCTTTTGTCTAAGGAGCGTGAGAAGAAGCTAGAGGACGAAAATAAAGAGAATCAAGCTCTATTGGTTACTGCTGAAACGAAGCTTTCTGAGGCTAAAAGACAGTACGATACAATGCTGGAGAGTGAACAGATGGAGTTATCAAGGCATTTGAAAGAAATATCCCTTAGAAACGATCAGGCTATCAATGACATTCGGAATAAGTATGAACTGGAGAAATTGGAGATTGTTAACAAGGAAAAAGAAAAGGCAGATCAGGCTGTACAAGAGATGGAACAAAATTGTGAACAAAAACTAGCAGAGGTGAAAGAAGAATCTAGGCAATGCCTGATTCGCATTCAGGAAGAACATGCTGCTCTGTTGAATCAAATTCAGCAAGAGCATTCCAGAAATGAACAAATTCGTAAAGCTGACCACAATGAAGAGTTAAGACATGTTCAACTTCAAGCTGAAAACGAATTGAAAGAGATATTGACGTTACTGAGAAATGAACATGAGGCTCGGATGAAAGGCTTGACATGTCAAAACGAAGATGAGTGTAGGAAACTTCAAGAGGAATTGGATCTCCAAAAAACCAAAGAAGACAGGCAGAGAACTTTATTGCAATTGCAATGGAAAGTGATGGGTGACAAGCTACAAGAGGACCAAGAAGTGAATTCAAAGAAGGACTACTCCATGTCATCAATCAAGATGAGAGATTCTGGTGGTTCCCGAAAAAGCAAGCGTGCTCTGATTAGAACAGCAAATGAAGAGGAATCACCTTACTTGCAAGACACTCAAACACCGGTATCACAGTTGTTGAAGACCGTAGAGGACATTAACACAGGAAGTGTTGCAAATATTCCTAAGCATCATAAGAAGGTTACTCGCCATGAATATGAAGTTGAAACTACAAATGGAAGGACGACCACTAAAAGAAGAAAAACCAAAAGTACGGTTCTGTTTGAGGACCCGAGAAAACATAACAAAACTCCAAGAAGAAACACCCCCAGAGTTCCTGTCAAGTACCTCTTCTACGACATGGCTCATGGGACTCTTGGCTACTGCGTCTCCCGTCAGTTCGCCGTGGATGTTTACAGGACTGAGAATGCTGCGTATGCTTTGTTGAGATTGGGTGTGGACTTGAATGTTTCTCATCTCAGGAAACAGTTCTATGTTGACAGGTCAGTGATCCTTTGGTCTTACTGTGATTCATATACCTCGTTTGAATGTTTTCCACTCAACTGTGGAGTACCTATTTTGTTACAAATGGATTAA 4422 41.16 MASYDYEDSGANYDDPRHATAPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETHQMYETSFQSLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKTKTEQEIALLRKFDQAWNVYGVLNYLQAFVEKSSIIHILEEEKEGLEQFTATDGYDYSGGSSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLLPIDISQQGVFTSVIGSHITTIYHYGFANLMLRRYVDAIHEFNRILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICVSLCPQVKLVDETVNSQLREKYGEKMIRMQRYDEEAFAIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGIRTFLKVYSSISLGQLATYMEMDESTLRTILLTYKHKTHAVDSVGKIMSNADVDFYIDDDIIHVVESKPVNRYGDFFLRQIVKSETGLSFLLESFVEVAFWTKFLPGTDFSPSLTSDSTMEKLGVPSMKRLNQLNSLPGLAPGTTKTFSFSSRSVPDSASSGSFVNLKIAAEKLMKEQAAVKTDLEMANAKLRKSVEHTRNLEDKVQNALNENAKLQVKQKEDEKLWKGLELKFSSAKTLSDQLTETLQHLASQVQDAEKDKEVLEAKLSASSTAVDGLNQQMQELSIKVESVEETLRNREKELAELKIEKEEICKLYKKEQQGTANLIEEKDSITKTFEDTLMQNRLIIEGLNSKLEEAQFVSNSKEDKITSLIALRDDLQKEKSDLEMHNDEVHKKLDASLMEIKNLENLVNLLVEQLVELDRHNSTFLEKFNQLNLLNDSCFKLAKLERNVASELAQNQYNKLYDNLICITSEKSALKLINVESQEKVDELQKVQESLMAQHSEESRLAGERIQKLESEVETLVSEKTGAESLVSKLGEEIVTLSESSRSSESKMQDLLQKITALEIENRCNVEKLEKELHDKTEEMDTLMKESENHKKHADMQAVESDQLRTILKENEELILLSKEREKKLEDENKENQALLVTAETKLSEAKRQYDTMLESEQMELSRHLKEISLRNDQAINDIRNKYELEKLEIVNKEKEKADQAVQEMEQNCEQKLAEVKEESRQCLIRIQEEHAALLNQIQQEHSRNEQIRKADHNEELRHVQLQAENELKEILTLLRNEHEARMKGLTCQNEDECRKLQEELDLQKTKEDRQRTLLQLQWKVMGDKLQEDQEVNSKKDYSMSSIKMRDSGGSRKSKRALIRTANEEESPYLQDTQTPVSQLLKTVEDINTGSVANIPKHHKKVTRHEYEVETTNGRTTTKRRKTKSTVLFEDPRKHNKTPRRNTPRVPVKYLFYDMAHGTLGYCVSRQFAVDVYRTENAAYALLRLGVDLNVSHLRKQFYVDRSVILWSYCDSYTSFECFPLNCGVPILLQMD 1473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3040284 3053394 + CmaCh09G006440.1 Cma09g00644 300649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00644 1473 Coils Coil 982 1002 - -
Cma09g00644 1473 Coils Coil 805 857 - -
Cma09g00644 1473 Coils Coil 1117 1163 - -
Cma09g00644 1473 Coils Coil 1191 1211 - -
Cma09g00644 1473 MobiDBLite consensus disorder prediction 1342 1365 - -
Cma09g00644 1473 MobiDBLite consensus disorder prediction 1339 1365 - -
Cma09g00644 1473 Coils Coil 672 748 - -
Cma09g00644 1473 Coils Coil 1007 1027 - -
Cma09g00644 1473 Coils Coil 602 657 - -
Cma09g00644 1473 MobiDBLite consensus disorder prediction 1 28 - -
Cma09g00644 1473 Coils Coil 915 967 - -
Cma09g00644 1473 ProSiteProfiles PCI domain profile. 303 502 IPR000717 -
Cma09g00644 1473 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 551 1379 - -
Cma09g00644 1473 MobiDBLite consensus disorder prediction 1271 1296 - -
Cma09g00644 1473 Pfam RNA polymerase I-associated factor PAF67 118 514 IPR019382 GO:0003743|GO:0005737|GO:0005852
Cma09g00644 1473 Hamap Eukaryotic translation initiation factor 3 subunit L [EIF3L]. 20 517 IPR019382 GO:0003743|GO:0005737|GO:0005852
Cma09g00644 1473 Coils Coil 1049 1097 - -
Cma09g00644 1473 PANTHER SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED 551 1379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00644 - - K15029 cmo:103503590 1262.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01429 Cma09g00644 CCT
Cma01g01428 Cma09g00644 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01429 Cma-Chr1:10055869 Cma09g00644 Cma-Chr9:3040284 0 transposed
Cma01g01428 Cma-Chr1:10048574 Cma09g00644 Cma-Chr9:3040284 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g323 . . . . Bpe02g01192 . . . . . Cma01g01429 . Car09g00569 . . . . . . . . . . . . . . . . . . Cone4ag1529 Cone7ag1424 . . Lsi04g02340 Csa03g04562 Chy04g00141 . Blo17g00057 Blo18g00071 Bda01g00946 . Bpe14g00530 . Bma01g01336 . . Cmo01g01477 Cmo09g00626 Cma09g00644 . . . . Cpe02g00519 Bhi09g02607 . . . . . . . . . . . . . . . . Cme04g00165
Vvi18g405 . . . . Bpe02g00105 . . Bma01g02614 . . Cma01g01428 Cma09g00644 . . . Cpe06g00504 . . . . . . . . . . . . . . . Cone4ag1340 Cone7ag1590 . . Lsi04g02341 Csa03g04563 . . . . Bda11g00764 . . . . . Sed04g0532 Cmo01g01476 Cmo09g00627 . . . Car09g00570 . Cpe02g00520 Bhi09g02606 Tan01g3955 Cmetu04g1898 . Hepe01g2232 Mch11g0782 . Cla11g01493 Cam11g1549 Cec11g1582 Cco11g1577 Clacu11g1708 Cmu11g1527 Cre11g1942 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004016 1 6 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 5 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00644 Cma_Chr09 FPKM 21.103687 22.043381 25.758211 24.494366 25.757353 23.530151 25.792236 25.650646 22.826118 27.683416