Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00646 ATGGCTGCACTCCTTGGCAAGCACATGTTCGTCTTCGTTCCATTTCCCACTCGACCCTGTTTCCCACAGCCGTGCTTCTTCAAGTTCGATTCGGCCCTATCCATCTCTCATCGAGCTTCTGTTTCAACCGTTCGAGCTACTTCGGCTACCTCCATGGAAACTAGGACCGAGCTATCGGACCCTGTTTTGATTGATAAGGAAGTCAACAACATTGAGAATATTTTAGCTTGTTCCGTATGTTATGGCCCATTGACTGCGGCAGCTGGTTCGGGACTTTCAGTGGAGTCCACAAAGGGATATCAATTGGAATGCGGCACATGTAAAAAGTCATTCACTGGCAGTGAATCTCATTTGGACTTGACGATATCCGCTGGAATTAACAATGAAGAATCCATGCCTGCTACCACAGAGATTTTTCGGACTAGATTGGTGTCTTTTCTGTATGAGAGGGGCTGGCGTCAAAGTTTTTCAGCAATCCTTGGATTTCCAGGCCCAGAAAAGGAGTTCGAGTTTATAAAAAATTTCATCACACCAGTCTTAGGTGGAAACATAATTGATGCAAGTTGTGGAAGCGGAATGTTTTCAAGAATCTTTGCCAAGAGTGGGTTATTTTCTTCTGTTGTTGCATTGGACTACTCGGAGAACATGTTAAAGGAGTGTTATGCATTCATCAAAGAAGAGGAAAACTTCCCCAAAGAGAGCTTGGTTCTGATTAGAGCTGATATTGCTCGGCTTCCATTTGCTTCAAGTTCTATTGATGCAGTGCATGCTGGTGCTGCTTTACACTGCTGGCCTTCACCATCAGCTGCTGTGGCTGAAATAAGTAGAATTTTAAAACCCGGAGGAGTATTTGTTGGGAGCACTTACATAATCGATGGACCATTTTCTTTTATGCCATTTTTGGGGACTCAAATAGAGATTGCAAAGAAGATAATAGGGGGCCACATCGTTCTATCTGAACGTGAATTAGAAGAACTCTGCACGGCCTGCGGTATGGTCGACTTTAGATGTTTAAGAAATAGGAGGTTTGTAATGTTCTCTGCTAGAAAACGCAGCTGA 1059 43.81 MAALLGKHMFVFVPFPTRPCFPQPCFFKFDSALSISHRASVSTVRATSATSMETRTELSDPVLIDKEVNNIENILACSVCYGPLTAAAGSGLSVESTKGYQLECGTCKKSFTGSESHLDLTISAGINNEESMPATTEIFRTRLVSFLYERGWRQSFSAILGFPGPEKEFEFIKNFITPVLGGNIIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLKECYAFIKEEENFPKESLVLIRADIARLPFASSSIDAVHAGAALHCWPSPSAAVAEISRILKPGGVFVGSTYIIDGPFSFMPFLGTQIEIAKKIIGGHIVLSERELEELCTACGMVDFRCLRNRRFVMFSARKRS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3058412 3061992 + CmaCh09G006460.1 Cma09g00646 300651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00646 352 CDD AdoMet_MTases 183 291 - -
Cma09g00646 352 PANTHER METHYLTRANSFERASE 34 351 - -
Cma09g00646 352 Pfam Methyltransferase domain 186 285 IPR013216 GO:0008168
Cma09g00646 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 144 343 IPR029063 -
Cma09g00646 352 PANTHER OS08G0411200 PROTEIN 34 351 - -
Cma09g00646 352 Gene3D Vaccinia Virus protein VP39 139 347 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00646 - - - cmo:103503586 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00646 Cma-Chr9:3058412 Cma14g00989 Cma-Chr14:5185502 4.37E-07 dispersed
Cma12g01158 Cma-Chr12:9135299 Cma09g00646 Cma-Chr9:3058412 7.27E-95 transposed
Cma01g01426 Cma-Chr1:10039953 Cma09g00646 Cma-Chr9:3058412 2.65E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g396 . Blo12g00703 . Bda03g00494 . Bpe04g00450 . . . . . Cma09g00646 . . . Cpe06g00506 . . . . . . . . . . . . . . . Cone4ag1345 Cone7ag1586 . . Lsi04g02345 Csa03g04566 . . . . . . . . . . Sed04g0529 . Cmo09g00629 . . . Car09g00573 . . Bhi09g02609 Tan01g3959 . . Hepe01g2238 Mch11g0785 . Cla11g01496 Cam11g1552 Cec11g1584 Cco11g1580 Clacu11g1710 Cmu11g1529 Cre11g1945 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005033 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 2 1 1 1 1 6 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00646 Cma_Chr09 FPKM 1.026274 1.071186 6.168619 6.259367 14.175065 12.736406 14.754079 12.470127 12.934601 16.344076