Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00647 ATGGATTCCGGCAGCCCAAGTTTGCAATCCTCCAGCGGCGGCGATGAAGATTACGACTCTCATCAGCCTTTTCCCCCGCCGCCACCGCCGCCCCCACTTTTCTTCAACCCCAATTCCTACCAGACCCACCTCCTCCCCTCCTCCCCTTTCTACGATTTCCCCTCCGATTACACTTTCAACCCTTCCAACTCCGGGACATCTCAACCCGCCGCCGCGGAACCCACCCAAAACCAAATCCCAATTCGTTCATCCGGGGTTTTACATCCCAAAGCCACCACAAAGAAGAGAACTAGAGCCTCACGGAGAGCCCCCACCACCGTTCTCACAACCGACACTACGAATTTCCGTGCAATGGTGCAAGAGTTCACCGGAATCCCTTCCCCGCCGTTTACCGCTGGTGGGTCATCCTATTCCCGCCGATTTGATCTCTTCAACTTAGTTAAAACAACCAGCTCCACACCCACTATTCTAGAAACTTCTGGATCGGGTCTTTACTCTTCTCGTGTGGTAAAGACACAGGCTGCTATCAGGGCTGATTTAGATGCGCCCCACAATAGAACAAGCCCACTGTTAGTGTCAGCCGTGCTGCAAAATGATGAAACCTGGAGAAGCAATACCAGTGGTACCGCAGCAGCGGGTGTCAACTACGAATTCTGGCCTAAATTCGCGGGCGCCCAGGGAGGGACCGAGATGAAGTCCGAGACGGTGACATTGATTCTGGTAAACCTCGCCGGAGTAATGGAGAGGGCCGACGAATCTCTGTTACCTGGTGTCTACAAAGAGGTCGGTGCCGCCTTGCACACCGGTCCTACTGGTCTCGGTTCCTTGACTCTCTTCAGATCCATCGTTCAGGCCTCTTGCTATCCCTTGGCTGCTTATTTGGCCGTGCGCCATAACCGAGCTCATGTGATTGCTCTCGGCGCTTTCCTCTGGGCTGCCGCTACGTTTCTCGTTGCCTTTTCCTCTACATTCCTTCAGGTCGCTGTTTCAAGAGCATTGAATGGGATTGGCCTTGCATTAGTTGCACCTGCCATCCAGTCCCTCGTCGCAGATTCAACAGATGACCATAACCGTGGTTTGGCTTTTGGATGGCTTCAAACGACTGGCAACTTAGGCTCCATTATTGGCGGGTTGTGTTCAATAATAATAGCTCCAATAACAATTATGGGAATCCCTGGTTGGAGAATTGCATTTCATCTTGTTGGACTAATCAGTGTTGTTGTTGGCATTCTAGTCCGTCTCTTTGCACATGATCCACATTTTTCAGACAACGGCATAAAAACTGGTAATCGTATTCCACCCCATAATTCCTTTTGGTCTGGAGTCAAGGACTTGGTACAGGAATCAAAATCAGTTATAAGGATTCCATCCTTTCAGATCATAGTAGCGCAGGGTGTCACAGGTTCATTTCCCTGGTCAGCCTTGTCATTTGCAACAATGTGGTTGGAACTCAAGGGCTTCTCCCACGAGAAGACTGCTTTTCTGATGGGCCTGTTTGTGATTGGAAACTCTCTTGGAGGCTTGTTTGGAGGTAAAATGGGAGATATCCTCTCCACACGTTTCCCAGATTCCGGGAGGATTATTCTGGCACAAATCAGCTCAGCGTCAGGCATTCCTCTAGCTGCAGTTCTTCTGCTCTTCTTGCCTGATGGCCCATTTACAGCAGTTCTCCATGGACTAGTCTTGCTCATTGTGGGGTTTTTCATTTCTTGGAATGCTCCAGCTACAAATAATCCTATTTTTGCAGAGATAGTTCCCGAAAAATCTCGGACAAGTGTCTATGCTTTAGATCGATCTTTGGAATCTATTTTGTCATCATTTGCTCCTCCTATTGTTGGGATTCTGGCTCAGCATGTCTATGGATATAAGCCCGTTAAGAGAGGATCTAGTGAGACTGAAGAGATTGCCACAGATAGGGGGAATGCAGCATCATTAGCCCGGGCATTGTACACAGCAATAGGAATTCCATTGGCTCTCTGTTGTTTTATATACTCGTTTCTGTATTGCACTTATCCAAGAGATAGAGAACGAGCACGTATGGAAGTTTTAATTGAATCAGAGATGCAACAAATAACTTCTGAATGGCCAACTTCAGGTTCTCCATTCTCTCAAGTTCATTTATCAGAGTCAGGTGAGCTACATGCTAGAGACAGAGAAGTCAATGATATGGACTATAAAGAAGAGGATGATCTAGATTTCGATGATGACGAAAAGACAGCCCTTTATAGCCAGTGGACATTTTCAAATTTTCTCAAACAATAG 2262 47.83 MDSGSPSLQSSSGGDEDYDSHQPFPPPPPPPPLFFNPNSYQTHLLPSSPFYDFPSDYTFNPSNSGTSQPAAAEPTQNQIPIRSSGVLHPKATTKKRTRASRRAPTTVLTTDTTNFRAMVQEFTGIPSPPFTAGGSSYSRRFDLFNLVKTTSSTPTILETSGSGLYSSRVVKTQAAIRADLDAPHNRTSPLLVSAVLQNDETWRSNTSGTAAAGVNYEFWPKFAGAQGGTEMKSETVTLILVNLAGVMERADESLLPGVYKEVGAALHTGPTGLGSLTLFRSIVQASCYPLAAYLAVRHNRAHVIALGAFLWAAATFLVAFSSTFLQVAVSRALNGIGLALVAPAIQSLVADSTDDHNRGLAFGWLQTTGNLGSIIGGLCSIIIAPITIMGIPGWRIAFHLVGLISVVVGILVRLFAHDPHFSDNGIKTGNRIPPHNSFWSGVKDLVQESKSVIRIPSFQIIVAQGVTGSFPWSALSFATMWLELKGFSHEKTAFLMGLFVIGNSLGGLFGGKMGDILSTRFPDSGRIILAQISSASGIPLAAVLLLFLPDGPFTAVLHGLVLLIVGFFISWNAPATNNPIFAEIVPEKSRTSVYALDRSLESILSSFAPPIVGILAQHVYGYKPVKRGSSETEEIATDRGNAASLARALYTAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEMQQITSEWPTSGSPFSQVHLSESGELHARDREVNDMDYKEEDDLDFDDDEKTALYSQWTFSNFLKQ 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3064477 3070259 - CmaCh09G006470.1 Cma09g00647 300652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00647 753 ProSiteProfiles Major facilitator superfamily (MFS) profile. 237 675 IPR020846 GO:0022857
Cma09g00647 753 Gene3D MFS general substrate transporter like domains 454 681 IPR036259 -
Cma09g00647 753 Gene3D MFS general substrate transporter like domains 232 422 IPR036259 -
Cma09g00647 753 PANTHER - 226 746 - -
Cma09g00647 753 CDD MFS_spinster_like 238 664 IPR044770 -
Cma09g00647 753 Pfam VQ motif 102 129 IPR008889 -
Cma09g00647 753 Pfam Major Facilitator Superfamily 244 609 IPR011701 GO:0022857|GO:0055085
Cma09g00647 753 MobiDBLite consensus disorder prediction 21 36 - -
Cma09g00647 753 MobiDBLite consensus disorder prediction 56 105 - -
Cma09g00647 753 MobiDBLite consensus disorder prediction 56 83 - -
Cma09g00647 753 PANTHER SPINSTER 226 746 IPR044770 -
Cma09g00647 753 MobiDBLite consensus disorder prediction 1 17 - -
Cma09g00647 753 MobiDBLite consensus disorder prediction 1 39 - -
Cma09g00647 753 SUPERFAMILY MFS general substrate transporter 235 676 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00647 - - - bhj:120085856 905.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01424 Cma09g00647 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00801 Cma-Chr3:6155446 Cma09g00647 Cma-Chr9:3064477 0 dispersed
Cma04g00801 Cma-Chr4:4098360 Cma09g00647 Cma-Chr9:3064477 4.44E-13 dispersed
Cma07g00537 Cma-Chr7:2318532 Cma09g00647 Cma-Chr9:3064477 5.42E-12 dispersed
Cma07g00539 Cma-Chr7:2321581 Cma09g00647 Cma-Chr9:3064477 0 dispersed
Cma09g00647 Cma-Chr9:3064477 Cma20g01117 Cma-Chr20:8813036 2.00E-117 dispersed
Cma01g01424 Cma-Chr1:10028846 Cma09g00647 Cma-Chr9:3064477 0 transposed
Cma01g01423 Cma-Chr1:10024187 Cma09g00647 Cma-Chr9:3064477 3.48E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g395 . . . . Bpe02g00101 . . Bma01g02618 . . Cma01g01424 Cma09g00647 . . . Cpe06g00507 . . . . . . . . . . . . . . . Cone4ag1346 Cone7ag1585 . . Lsi04g02346 Csa03g04567 . . . . . . . . . . Sed12g1410 Cmo01g01473 Cmo09g00630 . . . Car09g00574 . Cpe02g00523 Bhi09g02610 Tan01g3960 Cmetu04g1462 . Hepe01g2239 Mch11g0787 . Cla11g01497 Cam11g1553 Cec11g1585 Cco11g1581 Clacu11g1711 Cmu11g1530 Cre11g1946 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001621 1 2 2 2 2 1 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 3 3 2 2 2 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00647 Cma_Chr09 FPKM 0.507741 0.476606 1.89345 2.111801 1.235217 1.063727 1.313092 1.635934 1.237236 1.460693