Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00648 ATGAATGAACCCAACAATGGTTCTGGATTTGATCAAAGAAAAACGCCGCCGCTCACTGACCTGAACGACGGCGGCGATAGAGAAGAACTAATTGCAGAGATAATTATGGAAAAAGAAGCCGATTTCTCTCGTTGTGGTTTTATGAGAGGGGTTTTCCAGCGACGGTGCAAATGGTTGAAGAAAACCTCTGTGCATTCATTACCCACAAACAACACCGAACCAGTCGACTTAAAAGTACCCAAAACAGAGAACCCAACAAGGAAGAGCCGGAGCTCTGTTTCCGACGATGCGCCAACAGCCAGAAACTCAGTGGAACAAGATCAAAAGACACCGAAAAAACCCACTTTGGATCAACCAAGGCCCTCGATTTCTCAACAAAAGAATCAAAGTCGAAGGCCTTCCGATGCTGCAAGAAGCTCCACATCGTCCTCCAATGGCTCTGCACAAACCAGAGCGATCAATTCCCAGCAACAATTGACCGAACCCAGAACCCACATCCGTACATCTTTAAGTAATGGCGCGGTTTTGGGTAATTTGAAGCAAGCTGGAGGTGGGAATCTGTCGGCAAACAACAGTCCAAGGCTGAAAGAGATGAACTCAAGTCCAAGACTTGGAGGTAATAACATGGGGAACATAATTCGGAGAAATTCATGTGAATTCCGACAGATTCAAGGCGTGAGAGGTAAATTAGAACCGGATGTTTTGAAATCCATGGGAAATGAGGCATACAAAAAGGGGAAATATGAAGAAGCATTGGCTTTGTATAATAGAGCAATAGATTTGGATTCAGAGAACGCCGTTTACTACAGCAACAAAGGAGCTGCTCTGATTGGCTTAAATCGTTTGATGGAAGCCATTGAAGAATGCAAAAAAGCATTAAAGATTCAGCCTTCTTATCAAAGAGCCCATCAACGTCTAGCCACTATCTACCTCAGAACTGGAGAGCCTGAGAAAGCACTGGATCACATGGAACAATCCGGCTCATACAGTGACATAAACGACATGAACAAAGCTCGTGCACTTCAGAGTTGCCTGAGTAGGTGTATTGAAGCAAGAAAGTTACAAGAATGGGACACTCTGTTCAAAGAGACCAATTATGCAATTTCCTCTGTTTCTTGTTCAGCTTATAAACTCTATGCCCTGCAAGCTGAGGCATTGTTGAAGCTCCATAGACATTTAGAGGCATATTCCATTTACCAAAAGGGCCAAACCCTAATGGCTAACACTCTAACCAAGTCATTTAGTTTATCTGATAGCGCCCTTATTTTATCCATCGAGGCACAAGTTTACATGACCATGGGCAGGTTTGAGGAAGCAGTGGAAGCAGCTGAAAAATCAACACAGCTTGATCCAACCAACAGGGAAGCAAGTAGAGTGGCAAAATGGGCTAAGTTCATTTCATCAGCTCGATTGAGAGGCAATCTACTTTTCAAGGAATCTAGATTCTCTGAGGCATGTATTGCATATAGTGAAGGACTAGAAAACGACCCATATAACTCAATTTTGTTATGCAATCGAGCCGCTTGTCGATCGAAGCTCGGGCAGTATGAGAAAGCTGTTGAAGATTGCACTGCAGCTCTCCACGCACAGCCATGTTACAGTAAAGCCAGACTCCGCAGGGCTGATTGCAATGCTAAAATGGAACGATGGGAGGCTTCAATTCAAGATTATGAGGTTTTGATAAGAGAAACACCAGGAAATGAGGAAGTGGGGAGGGCTCTGTTCGAGGCGAAGCTTCAACTCAGAAAGCAGCATGGGGAGGACGTCAAAGACATGAAATTTGGGTCCAATTTAGTGTCTATTTCTAGCTACGAGCGGTTTAGACACTTCGTTACTTCTCCTGGGATGTGTGTGGCTCTGTTTTGCAACAAAGGCAACCAAAAACAGGGGTTGGAAGTGTTGGAGCAGGTTTACAAGAGGTTTCCATCAGTAAACTTTCTCAAGGTGGAGATAGAAGATCATCCTTATTTGGCGAAGTTGGAGAAAGTGAGTGCTATTCCAGCTTTTAAGATATACAGAAATGGAAGAATAGTGAAGGAGATTGCAGCCTCTGAACCCCATTCATTAGAGAGCTTAGTGAAGTTGTGCAGCAGTTGA 2097 44.02 MNEPNNGSGFDQRKTPPLTDLNDGGDREELIAEIIMEKEADFSRCGFMRGVFQRRCKWLKKTSVHSLPTNNTEPVDLKVPKTENPTRKSRSSVSDDAPTARNSVEQDQKTPKKPTLDQPRPSISQQKNQSRRPSDAARSSTSSSNGSAQTRAINSQQQLTEPRTHIRTSLSNGAVLGNLKQAGGGNLSANNSPRLKEMNSSPRLGGNNMGNIIRRNSCEFRQIQGVRGKLEPDVLKSMGNEAYKKGKYEEALALYNRAIDLDSENAVYYSNKGAALIGLNRLMEAIEECKKALKIQPSYQRAHQRLATIYLRTGEPEKALDHMEQSGSYSDINDMNKARALQSCLSRCIEARKLQEWDTLFKETNYAISSVSCSAYKLYALQAEALLKLHRHLEAYSIYQKGQTLMANTLTKSFSLSDSALILSIEAQVYMTMGRFEEAVEAAEKSTQLDPTNREASRVAKWAKFISSARLRGNLLFKESRFSEACIAYSEGLENDPYNSILLCNRAACRSKLGQYEKAVEDCTAALHAQPCYSKARLRRADCNAKMERWEASIQDYEVLIRETPGNEEVGRALFEAKLQLRKQHGEDVKDMKFGSNLVSISSYERFRHFVTSPGMCVALFCNKGNQKQGLEVLEQVYKRFPSVNFLKVEIEDHPYLAKLEKVSAIPAFKIYRNGRIVKEIAASEPHSLESLVKLCSS 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3078336 3081202 + CmaCh09G006480.1 Cma09g00648 300653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00648 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 37 696 IPR044534 -
Cma09g00648 698 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Cma09g00648 698 MobiDBLite consensus disorder prediction 1 15 - -
Cma09g00648 698 Pfam Tetratricopeptide repeat 512 567 - -
Cma09g00648 698 MobiDBLite consensus disorder prediction 181 209 - -
Cma09g00648 698 SMART tpr_5 232 265 IPR019734 GO:0005515
Cma09g00648 698 SMART tpr_5 534 567 IPR019734 GO:0005515
Cma09g00648 698 SMART tpr_5 500 533 IPR019734 GO:0005515
Cma09g00648 698 SMART tpr_5 420 453 IPR019734 GO:0005515
Cma09g00648 698 SMART tpr_5 376 409 IPR019734 GO:0005515
Cma09g00648 698 SMART tpr_5 466 499 IPR019734 GO:0005515
Cma09g00648 698 SMART tpr_5 266 299 IPR019734 GO:0005515
Cma09g00648 698 SMART tpr_5 300 333 IPR019734 GO:0005515
Cma09g00648 698 Pfam TPR repeat 239 276 - -
Cma09g00648 698 MobiDBLite consensus disorder prediction 115 163 - -
Cma09g00648 698 MobiDBLite consensus disorder prediction 183 209 - -
Cma09g00648 698 MobiDBLite consensus disorder prediction 91 105 - -
Cma09g00648 698 Gene3D Tetratricopeptide repeat domain 231 586 IPR011990 GO:0005515
Cma09g00648 698 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 37 696 - -
Cma09g00648 698 SUPERFAMILY Thioredoxin-like 591 683 IPR036249 -
Cma09g00648 698 MobiDBLite consensus disorder prediction 66 163 - -
Cma09g00648 698 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Cma09g00648 698 MobiDBLite consensus disorder prediction 1 26 - -
Cma09g00648 698 ProSiteProfiles TPR repeat profile. 420 453 IPR019734 GO:0005515
Cma09g00648 698 SUPERFAMILY TPR-like 469 584 IPR011990 GO:0005515
Cma09g00648 698 Gene3D Glutaredoxin 593 697 - -
Cma09g00648 698 SUPERFAMILY TPR-like 232 456 IPR011990 GO:0005515
Cma09g00648 698 Pfam Tetratricopeptide repeat 422 453 IPR013105 -
Cma09g00648 698 CDD TRX_family 633 694 - -
Cma09g00648 698 ProSiteProfiles TPR repeat region circular profile. 232 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00648 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 1031.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01421 Cma09g00648 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00803 Cma-Chr4:4106708 Cma09g00648 Cma-Chr9:3078336 3.93E-138 dispersed
Cma09g00433 Cma-Chr9:1890197 Cma09g00648 Cma-Chr9:3078336 1.06E-11 dispersed
Cma09g00648 Cma-Chr9:3078336 Cma16g00687 Cma-Chr16:3577038 1.66E-126 dispersed
Cma01g01244 Cma-Chr1:8963556 Cma09g00648 Cma-Chr9:3078336 5.01E-127 wgd
Cma01g01421 Cma-Chr1:10016227 Cma09g00648 Cma-Chr9:3078336 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00648 Cma_Chr09 FPKM 10.809565 11.597866 5.512731 5.695357 4.445453 4.375882 4.822205 2.413354 2.989958 2.832653