Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00649 ATGTCTTTGGGGAAGAGATCACGTGCTCCGATGAAACGCACGCCGAGCATGACGGAGATCACCTTCGATCTGGGCAGCTCCGCCACCGACCAATTACCGCCGCCGTCGCTTGGTTACTCAACAATCACCCAAAAAATGGTGTCCCCAAGAAATTACAGACGGCACTCGGTTGATCTACAAGACAACGCTAATTTCCTCAGAGCTTGTTCTCTTTGCACTCGCCCTCTCGTCCCTGGCCGTGATATTTACATGTACAGGGGAGACAGGGGATTTTGCAGCGACGAATGTAGACAAAAGCAAATGAAACAAGATGAACGAATCGAGAAGTGCAGTTTAGCTTCAAAGAAAGCAGCAGCAGCGGCAGCGGCGGCGGCGGCGGCGGTGGTTGTTTCTAAATCGGTGGCCGTTCAGACCCAGATCTCCGGCAAGGGAGAAACAGTAGCTGCTTCATAG 453 52.54 MSLGKRSRAPMKRTPSMTEITFDLGSSATDQLPPPSLGYSTITQKMVSPRNYRRHSVDLQDNANFLRACSLCTRPLVPGRDIYMYRGDRGFCSDECRQKQMKQDERIEKCSLASKKAAAAAAAAAAAVVVSKSVAVQTQISGKGETVAAS 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3088403 3089264 - CmaCh09G006490.1 Cma09g00649 300654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00649 150 ProSiteProfiles Zinc finger FLZ-type profile. 64 108 IPR007650 -
Cma09g00649 150 Pfam zinc-finger of the FCS-type, C2-C2 60 106 IPR007650 -
Cma09g00649 150 PANTHER - 46 131 - -
Cma09g00649 150 PANTHER - 1 36 - -
Cma09g00649 150 PANTHER FCS-LIKE ZINC FINGER 5 46 131 - -
Cma09g00649 150 PANTHER FCS-LIKE ZINC FINGER 5 1 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00649 - - - bhj:120086414 231.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00799 Cma-Chr4:4088687 Cma09g00649 Cma-Chr9:3088403 2.12E-07 dispersed
Cma04g02317 Cma-Chr4:16130380 Cma09g00649 Cma-Chr9:3088403 1.18E-27 dispersed
Cma07g00530 Cma-Chr7:2296312 Cma09g00649 Cma-Chr9:3088403 6.03E-31 dispersed
Cma08g00829 Cma-Chr8:5021430 Cma09g00649 Cma-Chr9:3088403 2.92E-13 dispersed
Cma09g00649 Cma-Chr9:3088403 Cma15g00720 Cma-Chr15:3490004 6.00E-25 dispersed
Cma17g00654 Cma-Chr17:5509367 Cma09g00649 Cma-Chr9:3088403 1.63E-13 dispersed
Cma19g00381 Cma-Chr19:4289494 Cma09g00649 Cma-Chr9:3088403 9.20E-14 dispersed
Cma01g01418 Cma-Chr1:10007231 Cma09g00649 Cma-Chr9:3088403 1.49E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g376 . Blo12g00696 . Bda03g00503 Bpe02g00093 Bpe04g00458 . Bma01g02624 . . . Cma09g00649 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g01846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001468 2 2 3 4 3 1 4 2 2 2 2 2 4 2 1 4 2 1 4 2 2 2 2 2 2 2 2 4 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma09g00649 Cma_Chr09 FPKM 9.093081 12.057087 8.738309 13.978599 49.68029 40.432468 50.948246 0.986994 0.422208 0.401