Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00673 ATGTGTTGCCTTCCTCATCCAAATCCACCGCCGCTCCGAGCCATGTTCTTGCCTCGATTCCTCGCCGTCGTTTTTCTCTCCTCCCTCTGTTTCCTAACCCTCACTACCGGAGCCGCTCGCCTGCCGGACGACGAAGTCGAAGCGTTGAAGGAGATCGGAAGGACATTGGGAAAGACCGACTGGAATTTCGCCGCCGATCTATGCGGCGGCGTCGGCTCCGGTTGGATAACGAATTCGACGCAGTTCGATCCAAGTTTTGTTAACAATGTTACCTGCAATTGCTCGTTCCAAAATAATACTGTTTGTCACGTCACTAACATTGCTCTGAAGGCGCAGAGTCTTCCAGGTACTCTGCCGCCGCAAATAGTGAGGTTGCCTTTCCTGCAGGAACTTGATCTCACCCGCAATTATCTCAGCGGCCGAATTCCTCCAGAATGGGGTTCATCCAAGCTTCTCAAAATTTCCCTTCTTGGAAATCGATTGACGGGTCCTATCCCAAAAGAGATTGGAAACATCAGTACTCTTGCGGAGTTGGTTCTGGAAATGAATCATTTCTCTGGAAGTATACCTCCAGAAATTGGGAATTTGACCAGCTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCACCGTCCCTGGCAAGGATAACCACATTGACGGACTTTCGAATTAGTGATAATCACTTCACAGGGTCAATTCCTAAGTTTATTCAGAATTGGAAGAATCTTGGAAAAGTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAATTTAACTGATGTGAGAATCAGCGACTTGAATGGCGGTTCATCGCTCTTTCCACCCCTTGATACTTTGACAAAATTGAAAGTCCTGATATTGAGGAGTTGCAATATAACTGGGGTGCTGCCCGACAATCTTGGTGGACTTACAGCATTGAAAACTTTAGACTTTAGCTTCAACAAAATTACTGGACCAATACCTGCCAGCTTTGAAGCGTTGAAAAAAGTGGATAGCATATATCTATCTGGAAACATGCTAAATGGATCAGTGCCCTCTTGGATGCTACAACAAGGAGAAAGCATCGATCTCTCTTATAACAAATTTACTCGGATAAATGATCAGAACACTGGTTGCCAATCACGAAATTTAAACCTGTTTGCGAGTTCTTCACAGGACAATAATTTGAATGGAGCAGTTTCCTGTTTACCGAGCACTTGTGGAAAAACTTCGTACTCTCTCCATATCAACTGCGGTGGGAAGGAAGAAACAATTAACGGAACACCCAAATTTGATGCGGACACAAACACTGGAAAGTCGTCATTGTTTTCTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAATTTTATGGACGATGATCGCACAACAGACGATTTTATCGCATTAAACTCATCTGCTCTCTCAATATCAAATCCTGAATTGTACATGAGGGCACGCATTTCTCCGATCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACAGTAAGCCTCCATTTTGCTGAGATAATGTTTACTGATGACAAATCATACAGAAGCCTTGGCAGACGCTTATTTGATGTCTACGTTCAGGGAAAACTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTATTGGCAAACCTTTTGTAAAGAAATTCACAGTTTCTGTGACTAATGGTACTATAGAAATCCGCCTATTTTGGGCTGGGAAGGGGTCAAATGCTATCCCTGTGCGAGGAGTTTATGGTCCTTTAATTTCCGCCATTTCTGTTGATCCTGACTTTAAGCCACCATCAGAGGATGGACATGCCATATCTGCTGGTACAGTGGGTGGAATTGTGGCTGCTGTGGTCTCTGTTATCATCTTGGTTCTTGGAGTGTTGTGGTGGAGAGGATGTCAAAGAAAGACGGGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTCGGAACAGGTTCCTTTTCATTAAGACAAATCAGAGCTGCCACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGAGGTTTTGGTCCTGTTTACAAGGGCGTTCTTGCCGATGGCACCGTAATTGCAGTGAAGCAACTCTCTGCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGGATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGCTTATATATGAGTATCTGGAAAACAATAGCCTTGCTCGTGCCTTATTCGGACCCCAAGAATGTCAGCTGAAATTGGATTGGCCAACTAGGCAGAAGATTTGTGTTGGTATAGCCAGAGGTTTAGCATACCTTCACGAGGAGTCGAGACTTAAGATTGTTCACCGAGATATCAAAGCTACCAATGTTCTGCTCGATAAAAACCTCAACCCCAAGATTTCCGACTTCGGTTTAGCCAAGCTGGATGAAGAAGAAAATACACACATCAGCACCCGGGTTGCGGGAACATTCGGGTATATGGCACCAGAATACGCCATGCGAGGCTACTTAACCGACAAGGCAGATGTTTACAGCTTTGGCATTGTGGCGTTGGAGATAGTTAGTGGTCGAAGCAACACGAGTTTCCGAACCAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTCTAAAAGAGAAAGACAGTTTATTAGAGCTTGTGGATCCACGGTTAGGGTCTGATTTCAACAAGAGAGAGGCAATAGCGATGATCAACATTGCTCTCCAATGCACAAACGTCATTGCTGGGGACAGACCCGCCATGTCCTCTGTGGTGAGCATGCTGGAAGGGAAGGTTGCCGTGAAGGAGTTGGTTTCAAATCCTAGTGTCTCAAAACAAGATGTGAATGCAATGTGGAGCCAAATTTATCGCCAGAAAGGGCAAACGACAGACGAGAGCCAGACGCAAAGTTCGACGATGGATGGACCATGGACTGGTTCTTCAACAAGTGCCAGTGATCTCTACCCCATCCTCATGGATTCTAAATACTTGGAGAATAGAAGCCAAGGTTGA 3081 44.4 MCCLPHPNPPPLRAMFLPRFLAVVFLSSLCFLTLTTGAARLPDDEVEALKEIGRTLGKTDWNFAADLCGGVGSGWITNSTQFDPSFVNNVTCNCSFQNNTVCHVTNIALKAQSLPGTLPPQIVRLPFLQELDLTRNYLSGRIPPEWGSSKLLKISLLGNRLTGPIPKEIGNISTLAELVLEMNHFSGSIPPEIGNLTSLSRLLLTSNNFSGELPPSLARITTLTDFRISDNHFTGSIPKFIQNWKNLGKVAIQASGLSGPIPSEIGLLTNLTDVRISDLNGGSSLFPPLDTLTKLKVLILRSCNITGVLPDNLGGLTALKTLDFSFNKITGPIPASFEALKKVDSIYLSGNMLNGSVPSWMLQQGESIDLSYNKFTRINDQNTGCQSRNLNLFASSSQDNNLNGAVSCLPSTCGKTSYSLHINCGGKEETINGTPKFDADTNTGKSSLFSQGGENWGFSNTGNFMDDDRTTDDFIALNSSALSISNPELYMRARISPISLTYYAYCMGNGNYTVSLHFAEIMFTDDKSYRSLGRRLFDVYVQGKLELKDFNIADAAGGIGKPFVKKFTVSVTNGTIEIRLFWAGKGSNAIPVRGVYGPLISAISVDPDFKPPSEDGHAISAGTVGGIVAAVVSVIILVLGVLWWRGCQRKTGTLEQELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLADGTVIAVKQLSAKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPQECQLKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSFRTKDDCFYLLDHANTLKEKDSLLELVDPRLGSDFNKREAIAMINIALQCTNVIAGDRPAMSSVVSMLEGKVAVKELVSNPSVSKQDVNAMWSQIYRQKGQTTDESQTQSSTMDGPWTGSSTSASDLYPILMDSKYLENRSQG 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3170204 3180357 + CmaCh09G006730.1 Cma09g00673 300678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00673 1026 SUPERFAMILY Protein kinase-like (PK-like) 664 975 IPR011009 -
Cma09g00673 1026 Pfam Protein tyrosine and serine/threonine kinase 683 950 IPR001245 GO:0004672|GO:0006468
Cma09g00673 1026 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 306 360 - -
Cma09g00673 1026 SMART serkin_6 680 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00673 1026 Gene3D Ribonuclease Inhibitor 277 391 IPR032675 -
Cma09g00673 1026 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 92 305 - -
Cma09g00673 1026 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 398 993 - -
Cma09g00673 1026 Gene3D Ribonuclease Inhibitor 208 276 IPR032675 -
Cma09g00673 1026 Pfam Malectin domain 419 603 IPR021720 -
Cma09g00673 1026 Gene3D - 415 607 - -
Cma09g00673 1026 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Cma09g00673 1026 Gene3D Phosphorylase Kinase; domain 1 647 755 - -
Cma09g00673 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cma09g00673 1026 Gene3D Ribonuclease Inhibitor 43 207 IPR032675 -
Cma09g00673 1026 Gene3D Transferase(Phosphotransferase) domain 1 756 966 - -
Cma09g00673 1026 CDD STKc_IRAK 686 953 - -
Cma09g00673 1026 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 92 305 - -
Cma09g00673 1026 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 398 993 - -
Cma09g00673 1026 MobiDBLite consensus disorder prediction 982 1008 - -
Cma09g00673 1026 SUPERFAMILY L domain-like 94 375 - -
Cma09g00673 1026 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 306 360 - -
Cma09g00673 1026 ProSiteProfiles Protein kinase domain profile. 680 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01262 Cma-Chr1:9099029 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma01g01264 Cma-Chr1:9108777 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma01g01265 Cma-Chr1:9117332 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma01g01267 Cma-Chr1:9127605 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma09g00673 Cma-Chr9:3170204 Cma13g00577 Cma-Chr13:5785809 0 dispersed
Cma09g00676 Cma-Chr9:3191710 Cma09g00673 Cma-Chr9:3170204 8.67E-18 dispersed
Cma09g00673 Cma-Chr9:3170204 Cma09g00674 Cma-Chr9:3181465 0 tandem
Cma19g01059 Cma-Chr19:8910273 Cma09g00673 Cma-Chr9:3170204 0 transposed
Cma01g01259 Cma-Chr1:9056138 Cma09g00673 Cma-Chr9:3170204 2.19E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68801 PF07714 PK_Tyr_Ser-Thr 7.80E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00673 - - csv:101221782 1663.28