Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma09g00674 ATGTTTGCGCTTCGATTCCTCGCCGTCTTTCTTCTCTTCTCTCTCGCTTCCGCCGCCGCTCGGCTGCCGGACGACGAAGTTGAGGCGCTGAGGGAAATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCTCGGCGGATCCTTGCGGCGGTTTGAGTAGCGGTTGGGTATCGGCTTCCTTCGAAACTGGTTATTATAATAACGTCACCTGCAATTGCACCTTCCACAATCATACCGTCTGCCACGTCACCGGCATTCGTCTAAGGGCGCAGAGCCTTCCGGGTACTCTGCCACCGGCAATAGCGAGGCTGCCTTTCCTGCAGGAACTCGATCTTTCCCGCAACTATCTCAGCGGCCCGATTCCTCCAGAATGGGGTTCCACCAAGCTTGCCAACATCTCCCTTCTTGGAAATCGATTGTCGGGTCCAATCCCAAAAGAGTTGGGAAACATCAGCACTCTTCTAGAGTTGGTCATTGAAGTTAATAATTTTTCTGGAAGTCTACCTCCAGAACTTGGAAATTTGACCAATTTATCAAGATTACTTCTCACCTCAAACAACTTTTCTGGGGAGCTCCCATCTACCTTGGGAAGTATAACCACCATGACGGACTTTCGAGTTAGTGATAATCACTTCACAGGGTCAATACCGAAGTATATTGAGAATTGGCCAAAACTTATAAAACTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGGAATTGGACGTTTGACACGACTAAATGATGTGAGAATCAGTGACTTGAACGGAGATCCATCACCCCTTCCACCCATTAATACTTTAACAAATTTGAAAACCCTTATATTGAGGAGTTGCAATATAAATGGGACGCTGCCCGAAAGTTTTGATGGGCTGCAAAACGTGCAAACCATAGACTTAAGCTTCAACAAGATTACTGGACCAATACCTGCCGGCTTTGAAGCTTTGAAAAAAGTGGATAGAATATATTTAGCTGGAAACTTGCTAAACGGAGCGGTGCCTTCTTGGATGCTGGAGGAGGGAGAAAACATTGATCTCTCTTATAACAAATTTACTCATACAAATTTTCAGGACATTGGTTGTGAAGTACGAAGTATAAACCTGTTTGCGAGCTCGTCAGAGGATAATAATTCCAGTGGAACAGTTTCATGTTTAGCGGGCACTTGTGCAAAAACTTGGTATTCACTCTATATCAATTGCGGTGGGAAGGAAGATTTGGTTAACAGAACAATCAAGTATGATGCCGACACAAACACTGGAAAATCATCCTTGTTTTTTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATTGCTCAACAGACGACTATATTACATTAAGTCCACCTTCTCTCCCTATGCCAAATCTTGAATTGTACAAAAGTGCACGAATTTCTCCAATCTCTCTTACTTATTATGCATATTGCATGAGTAATGGAAACTACACGGTAAGCCTCCATTTTGCTGAGATAGAGTTTTCTGATGACAAGACATACAAAAGCCTTGGCAGACGCTTATTTGATATCTACATTCAGGGAAAGCTGGAGGTGAAGGATTTTAATATTGCAGATGCTGCAGGTGGCGTTGGCAAACCTTTCGTACAGAAATTCACTGTTTCTGTAACTAATGGTTCTATAGAGATTCGCCTATTTTGGGCTGGGAAGGGGACAAATTCAGTCCCTATGAGAGGAATTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGAGCCACCATCAATAGATGGAAATGTCATATCTGCCAGTACATTGAATGGAATTATGGCTGCTGTGGTCTTTATTATCATCTTGGTTTTTGGAGTCTCGCGGTGGAGAGGCAGCCAAATAAAGAAAAGCACACTTGAACAAGAGTTGAAAGACATAGATCTAGGAACAAGTTCATTTTCATTAAGACAAATCAAAGCTGCCACTAACAATTTTGATGCTGCCGATAAGATCGGAGAAGGCGGTTTTGGTCCTGTTTACAAGGGTGTTCTTGCCGATGGCAGTGTAATTGCAGTGAAACAACTTTCTTCGAAGTCAAAACAAGGAAATCGAGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGCTGCATTGAAGGAGATCAACTCTTGCTAATATATGAGTATCTGGAAAATAATAGTCTTGCTCGTGCCTTATTCGGACCTGAAGAATATCAACTGAACTTGGATTGGCCAACTAGGCAGAAGATATGTATTGGTATTGCTAAAGGTTTAGCATATCTTCACGACGAGTCGAGACTAAAGATCGTTCACCGAGACATCAAAGCTACCAATGTTCTTCTCGATAAAAATCTGAACCCCAAGATTTCCGACTTCGGTTTGGCCAGGCTGGATGAAGAAGGAAATACACACATCAGCACACGGGTTGCTGGAACCTATGGATATATGGCACCAGAATACGCTATGCGAGGCTACTTAACTGACAAAGCAGATGTTTACAGCTTCGGTGTGGTGGCATTGGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTGGATTCAAGGATGATTGCTTATACCTTCTTGACCATGCTTACATTTTAAAAGAGGGAGGCAATTTACTAGAGCTTGTCGATCCACGGTTAGGCTCCGAATTCAACGAGAGCGAGGCAATGACGATGATCAATATTGCTATCCAATGCACGAACATCAATGCTGCAGACAGACCCTCGATGTCACTAGTAGTGAGCATGCTGGAAGGGAAGGTTGCTATGGAGGAGGTGGTCTCAGATCCTACTATCTCAAATCAAGATGTGAATGCAGTGTTGAGCAAACTGTACCGCAAGAAAGGGCAAACGACGAGCGAGAGCGAGATACAAAGCATGATGACATGCGAGAGCGAGACACAAAGTATGTTGATGGATGGACCATGGACTGATTCTTCAAATACTGACAGTGATTATCATAACATCATCTTGGATTCTAAATGCTTGGATGATACGGATGATAGGAACTAG 3051 43.36 MFALRFLAVFLLFSLASAAARLPDDEVEALREIGKTLGKTDWNFSADPCGGLSSGWVSASFETGYYNNVTCNCTFHNHTVCHVTGIRLRAQSLPGTLPPAIARLPFLQELDLSRNYLSGPIPPEWGSTKLANISLLGNRLSGPIPKELGNISTLLELVIEVNNFSGSLPPELGNLTNLSRLLLTSNNFSGELPSTLGSITTMTDFRVSDNHFTGSIPKYIENWPKLIKLAIQASGLSGPIPSGIGRLTRLNDVRISDLNGDPSPLPPINTLTNLKTLILRSCNINGTLPESFDGLQNVQTIDLSFNKITGPIPAGFEALKKVDRIYLAGNLLNGAVPSWMLEEGENIDLSYNKFTHTNFQDIGCEVRSINLFASSSEDNNSSGTVSCLAGTCAKTWYSLYINCGGKEDLVNRTIKYDADTNTGKSSLFFQGGENWGFSNTGSFMDDDCSTDDYITLSPPSLPMPNLELYKSARISPISLTYYAYCMSNGNYTVSLHFAEIEFSDDKTYKSLGRRLFDIYIQGKLEVKDFNIADAAGGVGKPFVQKFTVSVTNGSIEIRLFWAGKGTNSVPMRGIYGPLISAISVDPDFEPPSIDGNVISASTLNGIMAAVVFIIILVFGVSRWRGSQIKKSTLEQELKDIDLGTSSFSLRQIKAATNNFDAADKIGEGGFGPVYKGVLADGSVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEEYQLNLDWPTRQKICIGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNPKISDFGLARLDEEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGFKDDCLYLLDHAYILKEGGNLLELVDPRLGSEFNESEAMTMINIAIQCTNINAADRPSMSLVVSMLEGKVAMEEVVSDPTISNQDVNAVLSKLYRKKGQTTSESEIQSMMTCESETQSMLMDGPWTDSSNTDSDYHNIILDSKCLDDTDDRN 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3181465 3190086 + CmaCh09G006740.1 Cma09g00674 300679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma09g00674 1016 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 72 968 - -
Cma09g00674 1016 CDD STKc_IRAK 665 932 - -
Cma09g00674 1016 Gene3D Ribonuclease Inhibitor 261 381 IPR032675 -
Cma09g00674 1016 Gene3D Ribonuclease Inhibitor 23 260 IPR032675 -
Cma09g00674 1016 Gene3D - 396 586 - -
Cma09g00674 1016 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 72 968 - -
Cma09g00674 1016 SUPERFAMILY L domain-like 74 355 - -
Cma09g00674 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Cma09g00674 1016 SMART serkin_6 659 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00674 1016 Pfam Malectin domain 398 582 IPR021720 -
Cma09g00674 1016 ProSiteProfiles Protein kinase domain profile. 659 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma09g00674 1016 Pfam Leucine rich repeat 272 332 IPR001611 GO:0005515
Cma09g00674 1016 Gene3D Transferase(Phosphotransferase) domain 1 735 952 - -
Cma09g00674 1016 Pfam Protein tyrosine and serine/threonine kinase 662 930 IPR001245 GO:0004672|GO:0006468
Cma09g00674 1016 Gene3D Phosphorylase Kinase; domain 1 621 734 - -
Cma09g00674 1016 SUPERFAMILY Protein kinase-like (PK-like) 643 945 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00674 Cma-Chr9:3181465 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma09g00674 Cma-Chr9:3181465 Cma09g00676 Cma-Chr9:3191710 2.26E-12 proximal
Cma09g00673 Cma-Chr9:3170204 Cma09g00674 Cma-Chr9:3181465 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68802 PF07714 PK_Tyr_Ser-Thr 1.60E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma09g00674 - - cmo:103501834 1553.5